Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EQK04_RS11415 Genome accession   NZ_CP038517
Coordinates   2239908..2240678 (-) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCU11     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2234908..2245678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK04_RS11395 (EQK04_11495) - 2235001..2235822 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  EQK04_RS11400 (EQK04_11500) - 2235848..2236486 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  EQK04_RS11405 (EQK04_11505) glyS 2236653..2238698 (-) 2046 WP_017367621.1 glycine--tRNA ligase subunit beta -
  EQK04_RS11410 (EQK04_11510) glyQ 2238691..2239578 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  EQK04_RS11415 (EQK04_11515) recO 2239908..2240678 (-) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  EQK04_RS11420 (EQK04_11520) - 2240714..2240857 (-) 144 WP_008342408.1 YqzL family protein -
  EQK04_RS11425 (EQK04_11525) era 2241005..2241910 (-) 906 WP_007501305.1 GTPase Era -
  EQK04_RS11430 (EQK04_11530) - 2241903..2242301 (-) 399 WP_008342410.1 cytidine deaminase -
  EQK04_RS11435 (EQK04_11535) - 2242414..2242800 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  EQK04_RS11440 (EQK04_11540) ybeY 2242778..2243257 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  EQK04_RS11445 (EQK04_11545) - 2243258..2245372 (-) 2115 WP_407969087.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=355006 EQK04_RS11415 WP_007501304.1 2239908..2240678(-) (recO) [Bacillus altitudinis strain SCU11]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=355006 EQK04_RS11415 WP_007501304.1 2239908..2240678(-) (recO) [Bacillus altitudinis strain SCU11]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACTGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment