Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EQK04_RS07685 Genome accession   NZ_CP038517
Coordinates   1518060..1518962 (+) Length   300 a.a.
NCBI ID   WP_017367240.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCU11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1513060..1523962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK04_RS07665 (EQK04_07745) - 1513729..1515462 (+) 1734 WP_017367238.1 hypothetical protein -
  EQK04_RS07670 (EQK04_07750) - 1515459..1515734 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  EQK04_RS07675 (EQK04_07755) sucC 1515911..1517071 (+) 1161 WP_173962598.1 ADP-forming succinate--CoA ligase subunit beta -
  EQK04_RS07680 (EQK04_07760) sucD 1517094..1517996 (+) 903 WP_017367239.1 succinate--CoA ligase subunit alpha -
  EQK04_RS07685 (EQK04_07765) dprA 1518060..1518962 (+) 903 WP_017367240.1 DNA-processing protein DprA Machinery gene
  EQK04_RS07690 (EQK04_07770) topA 1519157..1521232 (+) 2076 WP_017367241.1 type I DNA topoisomerase -
  EQK04_RS07695 (EQK04_07775) trmFO 1521303..1522607 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EQK04_RS07700 (EQK04_07780) xerC 1522670..1523587 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34063.39 Da        Isoelectric Point: 8.2776

>NTDB_id=354995 EQK04_RS07685 WP_017367240.1 1518060..1518962(+) (dprA) [Bacillus altitudinis strain SCU11]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=354995 EQK04_RS07685 WP_017367240.1 1518060..1518962(+) (dprA) [Bacillus altitudinis strain SCU11]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGCGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCACCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCAATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38

Multiple sequence alignment