Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | E4664_RS08345 | Genome accession | NZ_CP038500 |
| Coordinates | 1691124..1691504 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836909.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CIAT758 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1686124..1696504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4664_RS08315 (E4664_08315) | tadA | 1686243..1686746 (-) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
| E4664_RS08320 (E4664_08320) | - | 1686753..1687877 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| E4664_RS08325 (E4664_08325) | ung | 1687874..1688587 (-) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| E4664_RS08330 (E4664_08330) | - | 1688638..1689234 (-) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| E4664_RS08335 (E4664_08335) | gspK | 1689464..1690423 (-) | 960 | WP_001218621.1 | type II secretion system minor pseudopilin GspK | - |
| E4664_RS08340 (E4664_08340) | xcpW | 1690423..1691124 (-) | 702 | WP_000594588.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| E4664_RS08345 (E4664_08345) | xcpV | 1691124..1691504 (-) | 381 | WP_000836909.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| E4664_RS08350 (E4664_08350) | - | 1691494..1692048 (-) | 555 | WP_000841372.1 | type II secretion system protein | - |
| E4664_RS08355 (E4664_08355) | - | 1692058..1692666 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| E4664_RS08360 (E4664_08360) | - | 1692704..1693477 (-) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| E4664_RS08365 (E4664_08365) | - | 1693495..1693836 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| E4664_RS08370 (E4664_08370) | - | 1693848..1694828 (-) | 981 | WP_001075419.1 | DNA polymerase III subunit delta' | - |
| E4664_RS08375 (E4664_08375) | kdsB | 1694840..1695601 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13991.24 Da Isoelectric Point: 9.8004
>NTDB_id=354850 E4664_RS08345 WP_000836909.1 1691124..1691504(-) (xcpV) [Acinetobacter baumannii strain CIAT758]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=354850 E4664_RS08345 WP_000836909.1 1691124..1691504(-) (xcpV) [Acinetobacter baumannii strain CIAT758]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |