Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   D11S_RS09740 Genome accession   NC_013416
Coordinates   1949123..1949674 (+) Length   183 a.a.
NCBI ID   WP_005547469.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans D11S-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1944123..1954674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D11S_RS09725 (D11S_2025) - 1945073..1946437 (+) 1365 WP_005547462.1 L-serine ammonia-lyase -
  D11S_RS09730 (D11S_2026) ansB 1946618..1947667 (-) 1050 WP_005547464.1 L-asparaginase 2 -
  D11S_RS09735 (D11S_2027) - 1947941..1949101 (+) 1161 WP_102873378.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  D11S_RS09740 (D11S_2028) pilF/pilF2 1949123..1949674 (+) 552 WP_005547469.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  D11S_RS09745 (D11S_2029) - 1949818..1950873 (+) 1056 WP_012821122.1 helix-turn-helix domain-containing protein -
  D11S_RS09750 (D11S_2030) ispG 1950885..1951988 (+) 1104 WP_005547472.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  D11S_RS09755 (D11S_2031) hisS 1952010..1953287 (+) 1278 WP_005547474.1 histidine--tRNA ligase -
  D11S_RS09760 (D11S_2032) - 1953298..1953912 (+) 615 WP_005547476.1 YfgM family protein -
  D11S_RS09765 (D11S_2033) - 1953965..1954417 (+) 453 WP_005539334.1 methyltransferase family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20667.46 Da        Isoelectric Point: 8.8869

>NTDB_id=35485 D11S_RS09740 WP_005547469.1 1949123..1949674(+) (pilF/pilF2) [Aggregatibacter actinomycetemcomitans D11S-1]
MIKFQQHNRAIPFIFPFLLSACVTQQSAVDFDKQKAAKARVELALGYLQQQDSAQAKLNLDKAFSYAPDYYLVSAAFAYF
YQQQGDIEQARTAYLNAIKLDDKQGDVFNNYGAFLCAQGEFDSAYVQFERALKSSNYYHQADTYENLALCALSAKNQAIY
RQNLALLTKISPKRAAKLPQGIK

Nucleotide


Download         Length: 552 bp        

>NTDB_id=35485 D11S_RS09740 WP_005547469.1 1949123..1949674(+) (pilF/pilF2) [Aggregatibacter actinomycetemcomitans D11S-1]
ATGATCAAATTTCAACAGCACAATCGTGCAATACCGTTTATTTTTCCGTTTTTGCTTTCCGCCTGCGTCACCCAACAAAG
TGCGGTGGATTTTGACAAGCAAAAAGCCGCCAAAGCACGCGTGGAACTGGCATTAGGCTATTTACAGCAGCAAGATTCGG
CACAAGCCAAGCTGAACCTGGATAAAGCCTTTTCTTACGCTCCCGATTATTATTTAGTGTCAGCGGCATTTGCCTATTTC
TATCAACAACAGGGCGACATTGAACAAGCCCGTACCGCCTATTTAAACGCGATAAAATTAGATGATAAACAAGGGGATGT
GTTCAATAATTACGGTGCATTTCTTTGTGCGCAAGGGGAATTCGACAGTGCCTATGTACAATTTGAACGCGCCTTAAAAA
GCTCGAATTATTACCATCAGGCGGACACTTATGAAAACTTGGCGTTATGTGCTTTATCCGCCAAAAATCAGGCGATTTAT
CGGCAAAATCTCGCATTATTGACGAAAATCTCTCCGAAACGGGCGGCAAAATTACCACAAGGGATAAAATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(78-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

57.576

90.164

0.519
  pilF Glaesserella parasuis strain SC1401

47.059

92.896

0.437

Multiple sequence alignment