Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   D11S_RS08795 Genome accession   NC_013416
Coordinates   1771744..1772265 (-) Length   173 a.a.
NCBI ID   WP_005573910.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans D11S-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1766744..1777265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D11S_RS08775 (D11S_1828) recC 1766942..1770358 (-) 3417 WP_005588592.1 exodeoxyribonuclease V subunit gamma -
  D11S_RS08780 (D11S_1829) comQ 1770370..1770672 (-) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  D11S_RS08785 (D11S_1830) - 1770647..1771342 (-) 696 WP_005545593.1 DUF2572 family protein -
  D11S_RS08790 - 1771383..1771757 (-) 375 Protein_1665 type II secretion system protein J -
  D11S_RS08795 (D11S_1832) comN 1771744..1772265 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  D11S_RS08815 (D11S_1836) pal 1772970..1773437 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  D11S_RS08820 (D11S_1837) tolB 1773452..1774732 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -
  D11S_RS08825 (D11S_1838) tolA 1774767..1775975 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  D11S_RS08830 (D11S_1839) tolR 1775992..1776414 (-) 423 WP_005545585.1 colicin uptake protein TolR -
  D11S_RS08835 (D11S_1840) tolQ 1776500..1777189 (-) 690 WP_005545584.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19832.99 Da        Isoelectric Point: 8.4896

>NTDB_id=35482 D11S_RS08795 WP_005573910.1 1771744..1772265(-) (comN) [Aggregatibacter actinomycetemcomitans D11S-1]
MQKGFTLLEMLIALFIISLLLTLALPAWQQHSQQTILQKEQQKLYVFLRQIQARVENSTDIWLLLANRDPVGKRWCLTAQ
IKNSHLCDCLNPVACPQNVSAHFYYPAFAETVLVSKRYYPLEFTRLSGIRNTASTTCFVLQANQQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=35482 D11S_RS08795 WP_005573910.1 1771744..1772265(-) (comN) [Aggregatibacter actinomycetemcomitans D11S-1]
ATGCAAAAGGGATTCACTTTGTTGGAAATGTTAATAGCATTATTTATTATCAGCCTGTTACTGACACTGGCTTTGCCGGC
ATGGCAACAGCATTCGCAACAAACTATTCTGCAAAAAGAACAACAAAAACTTTATGTCTTTCTTCGTCAAATTCAGGCGC
GCGTGGAAAATTCTACGGACATCTGGTTGTTATTGGCAAATCGTGATCCTGTAGGAAAGCGCTGGTGTTTGACAGCGCAA
ATTAAAAATAGCCATTTGTGCGATTGCCTAAATCCTGTTGCTTGCCCGCAAAATGTTTCCGCCCATTTTTATTATCCCGC
TTTTGCTGAAACTGTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTACCCGTTTAAGTGGTATTCGGAATACGGCTT
CTACCACTTGTTTTGTGCTACAAGCCAATCAGCAGCGTACTTTGTTTTCGTTCTTTAATGTGGGCAGTTTGAAATTAAAG
GATAACCAATCTTTGAGTGCTTGTGTCAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578

Multiple sequence alignment