Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   D11S_RS08780 Genome accession   NC_013416
Coordinates   1770370..1770672 (-) Length   100 a.a.
NCBI ID   WP_005545595.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans D11S-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1765370..1775672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D11S_RS08765 (D11S_1826) - 1766050..1766487 (+) 438 WP_005564385.1 DNA polymerase III subunit psi -
  D11S_RS08770 (D11S_1827) rimI 1766497..1766940 (+) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -
  D11S_RS08775 (D11S_1828) recC 1766942..1770358 (-) 3417 WP_005588592.1 exodeoxyribonuclease V subunit gamma -
  D11S_RS08780 (D11S_1829) comQ 1770370..1770672 (-) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  D11S_RS08785 (D11S_1830) - 1770647..1771342 (-) 696 WP_005545593.1 DUF2572 family protein -
  D11S_RS08790 - 1771383..1771757 (-) 375 Protein_1665 type II secretion system protein J -
  D11S_RS08795 (D11S_1832) comN 1771744..1772265 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  D11S_RS08815 (D11S_1836) pal 1772970..1773437 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  D11S_RS08820 (D11S_1837) tolB 1773452..1774732 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11662.57 Da        Isoelectric Point: 10.8981

>NTDB_id=35481 D11S_RS08780 WP_005545595.1 1770370..1770672(-) (comQ) [Aggregatibacter actinomycetemcomitans D11S-1]
MISRLRKINYKGMSLLSLLVTLSLFSGIFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=35481 D11S_RS08780 WP_005545595.1 1770370..1770672(-) (comQ) [Aggregatibacter actinomycetemcomitans D11S-1]
ATGATTTCGCGGTTACGGAAAATTAATTACAAAGGCATGAGCCTGTTGTCTTTATTGGTTACATTAAGTCTATTCAGCGG
GATTTTTCTCACGTTTAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.818

88

0.5

Multiple sequence alignment