Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GPY00_RS00500 Genome accession   NZ_CP046747
Coordinates   108792..109436 (-) Length   214 a.a.
NCBI ID   WP_001890391.1    Uniprot ID   Q9KSP3
Organism   Vibrio cholerae strain 3541-04     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 103792..114436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY00_RS00460 - 103862..104347 (+) 486 WP_044127280.1 GNAT family N-acetyltransferase -
  GPY00_RS00465 - 104344..105462 (-) 1119 WP_001190447.1 GGDEF domain-containing protein -
  GPY00_RS00490 pgsA 106355..106912 (-) 558 WP_001211977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GPY00_RS00495 uvrC 106960..108792 (-) 1833 WP_044127281.1 excinuclease ABC subunit UvrC -
  GPY00_RS00500 letA 108792..109436 (-) 645 WP_001890391.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GPY00_RS00505 - 109811..112174 (+) 2364 WP_044127282.1 DNA polymerase II -
  GPY00_RS00510 - 112146..114245 (-) 2100 WP_199252403.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23751.50 Da        Isoelectric Point: 6.4970

>NTDB_id=354727 GPY00_RS00500 WP_001890391.1 108792..109436(-) (letA) [Vibrio cholerae strain 3541-04]
MISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGIGGLEATKKLLRVNPDIKIIV
LTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASENPFADLSERELQIMLMI
TKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGILDTEKL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=354727 GPY00_RS00500 WP_001890391.1 108792..109436(-) (letA) [Vibrio cholerae strain 3541-04]
TTGATTAGTGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAAAGTAGCAGGGGAAGCTGACAGCGGTGAAGAAGCAGTAAAATGGTGCCGTACTAACCATGCGGATGTCATTTTAATGG
ATATGAACATGCCGGGTATTGGTGGCTTGGAAGCAACCAAGAAGCTGTTGCGTGTTAATCCGGACATTAAAATTATCGTA
TTGACGGTACATACCGAAAATCCGTTCCCAACCAAAGTGATGCAAGCGGGTGCCGCAGGTTATCTCACGAAGGGCGCGGC
ACCGGATGAAATGGTCAATGCGATCCGTATCGTTCACAGCGGTCAGCGTTACATTTCTCCAGAAATTGCGCAGCAAATGG
CGTTGAGCCAGTTTTCGCCCGCCTCTGAAAATCCTTTTGCTGATCTCTCCGAGCGTGAATTGCAGATCATGTTAATGATC
ACCAAAGGCCAGAAGGTGACGGACATTTCCGAACAGCTCAGTTTGAGCCCGAAAACCGTCAACAGCTACCGCTACCGTTT
GTTCGCCAAGCTGAATATCAACGGTGATGTGGAATTAACCCACTTAGCTATCCGACACGGGATCTTAGATACTGAGAAGT
TATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KSP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.905

98.131

0.509
  letA Legionella pneumophila strain ERS1305867

51.905

98.131

0.509