Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E4Z61_RS09005 Genome accession   NZ_CP038469
Coordinates   1694939..1695553 (-) Length   204 a.a.
NCBI ID   WP_135322469.1    Uniprot ID   -
Organism   Citrobacter tructae strain SNU WT2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689939..1700553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z61_RS08990 (E4Z61_08995) helD 1690163..1692217 (-) 2055 WP_135322466.1 DNA helicase IV -
  E4Z61_RS08995 (E4Z61_09000) - 1692343..1692789 (+) 447 WP_135322467.1 YccF domain-containing protein -
  E4Z61_RS09000 (E4Z61_09005) yccS 1692808..1694961 (+) 2154 WP_135322468.1 YccS family putative transporter -
  E4Z61_RS09005 (E4Z61_09010) sxy/tfoX 1694939..1695553 (-) 615 WP_135322469.1 TfoX/Sxy family DNA transformation protein Regulator
  E4Z61_RS09010 (E4Z61_09015) sulA 1695770..1696279 (+) 510 WP_135322470.1 SOS-induced cell division inhibitor SulA -
  E4Z61_RS09015 (E4Z61_09020) ompA 1696635..1697693 (+) 1059 WP_135322471.1 porin OmpA -
  E4Z61_RS09020 (E4Z61_09025) matP 1697792..1698244 (-) 453 WP_135322472.1 macrodomain Ter protein MatP -
  E4Z61_RS09025 (E4Z61_09030) - 1698430..1700190 (+) 1761 WP_135322473.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23244.91 Da        Isoelectric Point: 9.4249

>NTDB_id=354681 E4Z61_RS09005 WP_135322469.1 1694939..1695553(-) (sxy/tfoX) [Citrobacter tructae strain SNU WT2]
MKNLSYARIYKSQEYLASLGTIRYRSLFGSYSLTVGETVFAMVANGELYLRACEQSVQYCVKHSPVWLTFIKRGRPVILN
YYQVNDELWRNQQQLVSLSRYSLDAAVKEKQTRVAQHRLRELPNISFHLETLLSEAGIKDEGTLRTLGAQMCWLKLLQIN
PLLTVKILYALEGAISGVHEAALPAARRQELVEWASLIKPEPGN

Nucleotide


Download         Length: 615 bp        

>NTDB_id=354681 E4Z61_RS09005 WP_135322469.1 1694939..1695553(-) (sxy/tfoX) [Citrobacter tructae strain SNU WT2]
ATGAAAAACCTTTCTTATGCCAGGATTTATAAATCACAAGAATATTTGGCCTCTTTAGGTACGATTCGTTATCGCTCCCT
GTTTGGTAGCTATAGCCTGACAGTGGGGGAAACGGTCTTTGCAATGGTCGCCAACGGTGAGTTATACCTTAGGGCGTGTG
AGCAAAGCGTACAGTACTGTGTAAAACATTCCCCTGTCTGGCTGACGTTTATAAAACGCGGGCGTCCCGTGATCCTCAAC
TATTATCAGGTGAACGATGAATTGTGGCGAAACCAACAACAATTGGTGTCTTTATCACGATATTCGCTGGATGCAGCAGT
GAAAGAAAAACAGACGCGCGTTGCTCAACATCGGTTGAGGGAGCTCCCGAATATATCATTTCATCTGGAGACGTTACTGA
GCGAAGCCGGGATTAAAGATGAAGGTACATTACGTACCCTGGGTGCTCAAATGTGCTGGCTGAAGCTTCTGCAAATTAAC
CCGTTGCTAACGGTGAAAATTCTTTATGCCCTGGAAGGTGCAATCAGTGGGGTACATGAAGCAGCGCTCCCGGCGGCTCG
CCGCCAGGAGCTGGTTGAGTGGGCCAGTTTGATTAAGCCTGAACCAGGGAACTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

71.144

98.529

0.701

Multiple sequence alignment