Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   BAMTA208_RS00115 Genome accession   NC_017188
Coordinates   25284..25880 (+) Length   198 a.a.
NCBI ID   WP_003150697.1    Uniprot ID   A7Z0E4
Organism   Bacillus amyloliquefaciens TA208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 20284..30880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS00095 (BAMTA208_00085) - 21631..22143 (-) 513 WP_050794245.1 isochorismatase family cysteine hydrolase -
  BAMTA208_RS00100 (BAMTA208_00090) tadA 22265..22747 (+) 483 WP_013350737.1 tRNA adenosine(34) deaminase TadA -
  BAMTA208_RS00105 (BAMTA208_00100) dnaX 23230..24921 (+) 1692 WP_013350738.1 DNA polymerase III subunit gamma/tau -
  BAMTA208_RS00110 (BAMTA208_00105) - 24946..25269 (+) 324 WP_003150700.1 YbaB/EbfC family nucleoid-associated protein -
  BAMTA208_RS00115 (BAMTA208_00110) recR 25284..25880 (+) 597 WP_003150697.1 recombination protein RecR Machinery gene
  BAMTA208_RS00120 (BAMTA208_00115) - 25899..26123 (+) 225 WP_013350739.1 YaaL family protein -
  BAMTA208_RS00125 (BAMTA208_00120) - 26184..26447 (+) 264 WP_013350740.1 pro-sigmaK processing inhibitor BofA family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21990.53 Da        Isoelectric Point: 5.3504

>NTDB_id=35465 BAMTA208_RS00115 WP_003150697.1 25284..25880(+) (recR) [Bacillus amyloliquefaciens TA208]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDTVLDFAKALVNAKRNLTYCSICGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=35465 BAMTA208_RS00115 WP_003150697.1 25284..25880(+) (recR) [Bacillus amyloliquefaciens TA208]
ATGCAGTATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGACACAGTATTGGATTTTGCTAAGGCGCTTGTCAATGCGAAGCGGAATC
TGACATATTGCTCGATTTGCGGACATATTACAGATCAGGACCCTTGTTATATATGCGAGGATACAAGAAGAGATAAGTCT
GTTATTTGTGTCGTGCAGGACCCTAAAGATGTTATTGCAATGGAGAAAATGAAGGAATATAACGGCCAGTATCATGTGCT
TCACGGCGCGATTTCTCCAATGGACGGCATCGGCCCGGAGGATATTAAGATTCCGGAACTGCTGAAGCGCCTTCAGGATG
ACCAAGTGACAGAAGTTATTCTCGCAACCAACCCTAATATTGAAGGGGAAGCAACAGCGATGTATATATCGAGGCTGTTA
AAGCCCTCAGGCATCAAGCTCTCCCGTATTGCCCACGGCCTGCCCGTCGGCGGCGATTTGGAATATGCTGATGAGGTCAC
TCTTTCAAAAGCGCTTGAAGGAAGACGTGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  recR Streptococcus pneumoniae R6

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.551

98.99

0.52