Detailed information NTG0354631

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E4630_RS02260
• Genome accession: NZ_CP038465
• Coordinates: 478057..478929 (-)
• Length: 290 a.a.
• NCBI ID: WP_135318875.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain 23-C-23
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 473057..483929

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4630_RS02235 (E4630_02235)	-	474793..475977 (+)	1185	WP_135318872.1	tetratricopeptide repeat protein	-
E4630_RS02240 (E4630_02240)	mutT	475986..476399 (+)	414	WP_175044389.1	8-oxo-dGTP diphosphatase MutT	-
E4630_RS02245 (E4630_02245)	yacG	476460..476654 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
E4630_RS02250 (E4630_02250)	zapD	476664..477386 (-)	723	WP_024945431.1	cell division protein ZapD	-
E4630_RS02255 (E4630_02255)	coaE	477424..478038 (-)	615	WP_135318874.1	dephospho-CoA kinase	-
E4630_RS02260 (E4630_02260)	pilD	478057..478929 (-)	873	WP_135318875.1	A24 family peptidase	Machinery gene
E4630_RS02265 (E4630_02265)	pilC	478952..480193 (-)	1242	WP_017409439.1	type II secretion system F family protein	Machinery gene
E4630_RS02270 (E4630_02270)	pilB	480309..482024 (-)	1716	WP_200871048.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
E4630_RS02275 (E4630_02275)	-	482015..482455 (-)	441	WP_043160631.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
E4630_RS02285 (E4630_02285)	nadC	482778..483635 (-)	858	WP_135318876.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32454.74 Da
• Isoelectric Point: 6.7410

>NTDB_id=354631 E4630_RS02260 WP_135318875.1 478057..478929(-) (pilD) [Aeromonas hydrophila strain 23-C-23]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENVPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWILVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=354631 E4630_RS02260 WP_135318875.1 478057..478929(-) (pilD) [Aeromonas hydrophila strain 23-C-23]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCCCATTGTGGCCACGCC
ATCACGGCCATGGAGAACGTCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC
GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCGACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGATACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAACCTAGCAGGGGGATTTGCACCGCTGGCAGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTACTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGCCTCATCCTGCTGCGCAATCATCATCAGAATAAACCCATCCCCTTCGGCCCCTACCT
GGCCATCGCCGGCTGGATCGCACTGTTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.627	98.966	0.6
pilD	Vibrio campbellii strain DS40M4	55.245	98.621	0.545
pilD	Acinetobacter baumannii D1279779	53.521	97.931	0.524
pilD	Acinetobacter nosocomialis M2	53.521	97.931	0.524
pilD	Neisseria gonorrhoeae MS11	48.352	94.138	0.455