Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SaO217_RS02725 Genome accession   NZ_CP038461
Coordinates   566108..566677 (+) Length   189 a.a.
NCBI ID   WP_199878665.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O217     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 561108..571677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO217_RS02700 (SaO217_0523) cysE 562321..562968 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SaO217_RS02705 (SaO217_0524) cysS 562952..564352 (+) 1401 WP_000631982.1 cysteine--tRNA ligase -
  SaO217_RS02710 (SaO217_0525) - 564345..564749 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  SaO217_RS02715 (SaO217_0526) rlmB 564757..565503 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SaO217_RS02720 (SaO217_0527) - 565503..566027 (+) 525 WP_000664740.1 NYN domain-containing protein -
  SaO217_RS02725 (SaO217_0528) sigH 566108..566677 (+) 570 WP_199878665.1 sigma-70 family RNA polymerase sigma factor Regulator
  SaO217_RS02730 rpmG 566792..566935 (+) 144 WP_001791441.1 50S ribosomal protein L33 -
  SaO217_RS02735 (SaO217_0529) secE 566991..567173 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SaO217_RS02740 (SaO217_0530) nusG 567186..567734 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SaO217_RS02745 (SaO217_0531) rplK 567915..568337 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SaO217_RS02750 (SaO217_0532) rplA 568545..569237 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SaO217_RS02755 (SaO217_0533) rplJ 569509..570009 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SaO217_RS02760 (SaO217_0534) rplL 570052..570420 (+) 369 WP_001273587.1 50S ribosomal protein L7/L12 -
  SaO217_RS02765 (SaO217_0535) - 570595..571203 (+) 609 WP_031774738.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23111.98 Da        Isoelectric Point: 9.6015

>NTDB_id=354560 SaO217_RS02725 WP_199878665.1 566108..566677(+) (sigH) [Staphylococcus aureus strain O217]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLLIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=354560 SaO217_RS02725 WP_199878665.1 566108..566677(+) (sigH) [Staphylococcus aureus strain O217]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTACTTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment