Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   METVU_RS06935 Genome accession   NC_013407
Coordinates   1419410..1419634 (-) Length   74 a.a.
NCBI ID   WP_015733487.1    Uniprot ID   C9RI66
Organism   Methanocaldococcus vulcanius M7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1414410..1424634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METVU_RS06905 (Metvu_1409) - 1414416..1414829 (-) 414 WP_015733481.1 EamA family transporter -
  METVU_RS06910 (Metvu_1410) galU 1415036..1415890 (-) 855 WP_015733482.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  METVU_RS06915 (Metvu_1411) - 1416210..1416521 (+) 312 WP_015733483.1 roadblock/LC7 domain-containing protein -
  METVU_RS06920 (Metvu_1412) - 1416557..1416997 (+) 441 WP_015733484.1 V4R domain-containing protein -
  METVU_RS06925 (Metvu_1413) glgP 1417442..1419001 (+) 1560 WP_015733485.1 alpha-glucan family phosphorylase -
  METVU_RS06930 (Metvu_1414) - 1419118..1419339 (-) 222 WP_015733486.1 hypothetical protein -
  METVU_RS06935 (Metvu_1415) MMJJ_RS05685 1419410..1419634 (-) 225 WP_015733487.1 class III signal peptide-containing protein Machinery gene
  METVU_RS06940 (Metvu_1416) - 1419813..1420037 (-) 225 WP_015733488.1 hypothetical protein -
  METVU_RS06945 (Metvu_1417) - 1420152..1420430 (-) 279 WP_015733489.1 transcriptional regulator -
  METVU_RS06950 (Metvu_1418) - 1420441..1420968 (-) 528 WP_015733490.1 hypothetical protein -
  METVU_RS06955 (Metvu_1419) - 1420986..1421345 (-) 360 WP_015733491.1 gamma-glutamylcyclotransferase family protein -
  METVU_RS06960 (Metvu_1420) - 1421638..1422657 (-) 1020 WP_015733492.1 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein -
  METVU_RS06965 (Metvu_1421) - 1422986..1423480 (-) 495 WP_015733493.1 DUF2085 domain-containing protein -
  METVU_RS06970 (Metvu_1422) - 1423527..1423901 (-) 375 WP_048196914.1 DUF5518 domain-containing protein -

Sequence

Protein


Download         Length: 74 a.a.        Molecular weight: 7762.20 Da        Isoelectric Point: 10.4247

>NTDB_id=35456 METVU_RS06935 WP_015733487.1 1419410..1419634(-) (MMJJ_RS05685) [Methanocaldococcus vulcanius M7]
MKILKKIMSKKGQLSMEVGILVAAAVLVAVIAGYYYVKNIKSSSTTAGEKANKTVTTLGEAAENISSNISKLVS

Nucleotide


Download         Length: 225 bp        

>NTDB_id=35456 METVU_RS06935 WP_015733487.1 1419410..1419634(-) (MMJJ_RS05685) [Methanocaldococcus vulcanius M7]
ATGAAAATATTAAAAAAGATAATGTCAAAAAAAGGACAGTTATCAATGGAAGTAGGTATCTTAGTAGCAGCGGCAGTGTT
AGTTGCAGTTATCGCAGGATACTACTACGTAAAAAACATAAAAAGCAGTTCAACAACTGCTGGAGAAAAAGCAAATAAAA
CAGTTACAACATTAGGGGAAGCTGCAGAGAACATAAGTAGTAATATAAGTAAGTTGGTTTCATAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9RI66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

49.315

98.649

0.486
  epdE Methanococcus maripaludis strain DSM 2067

45.714

94.595

0.432

Multiple sequence alignment