Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SaO322_RS10960 Genome accession   NZ_CP038460
Coordinates   2122536..2122931 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B119     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2117536..2127931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO322_RS10935 (SaO322_02007) thiE 2118135..2118776 (-) 642 WP_000483160.1 thiamine phosphate synthase -
  SaO322_RS10940 (SaO322_02008) thiM 2118778..2119569 (-) 792 WP_001108484.1 hydroxyethylthiazole kinase -
  SaO322_RS10945 (SaO322_02009) thiD 2119553..2120383 (-) 831 WP_000594952.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SaO322_RS10950 (SaO322_02010) tenA 2120376..2121065 (-) 690 WP_000396067.1 thiaminase II -
  SaO322_RS10955 (SaO322_02012) sceD 2121452..2122147 (-) 696 WP_000751999.1 lytic transglycosylase SceD -
  SaO322_RS10960 (SaO322_02013) ssb 2122536..2122931 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SaO322_RS10965 (SaO322_02014) - 2123125..2123565 (+) 441 WP_000846746.1 YwpF-like family protein -
  SaO322_RS10970 (SaO322_02015) fabZ 2123622..2124062 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SaO322_RS10975 (SaO322_02016) murA 2124096..2125361 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SaO322_RS10980 (SaO322_02017) - 2125472..2125705 (-) 234 WP_000384523.1 DUF1146 family protein -
  SaO322_RS10985 (SaO322_02018) - 2126326..2126730 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=354550 SaO322_RS10960 WP_000932694.1 2122536..2122931(-) (ssb) [Staphylococcus aureus strain B119]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=354550 SaO322_RS10960 WP_000932694.1 2122536..2122931(-) (ssb) [Staphylococcus aureus strain B119]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment