Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SaO322_RS07980 Genome accession   NZ_CP038460
Coordinates   1596782..1597468 (-) Length   228 a.a.
NCBI ID   WP_078061108.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B119     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1591782..1602468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO322_RS07960 (SaO322_01470) rpsT 1592696..1592947 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SaO322_RS07965 (SaO322_01471) holA 1592992..1593966 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  SaO322_RS07970 (SaO322_01472) comEC 1594023..1596224 (-) 2202 WP_041204299.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SaO322_RS07975 (SaO322_01473) - 1596229..1596690 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SaO322_RS07980 (SaO322_01474) comEA 1596782..1597468 (-) 687 WP_078061108.1 ComEA family DNA-binding protein Machinery gene
  SaO322_RS07985 (SaO322_01475) - 1597508..1598224 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  SaO322_RS07990 (SaO322_01476) rsfS 1598227..1598580 (-) 354 WP_001088020.1 ribosome silencing factor -
  SaO322_RS07995 (SaO322_01477) yqeK 1598581..1599165 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SaO322_RS08000 (SaO322_01478) nadD 1599155..1599724 (-) 570 WP_000725163.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SaO322_RS08005 (SaO322_01479) yhbY 1599727..1600017 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  SaO322_RS08010 (SaO322_01480) aroE 1600021..1600827 (-) 807 WP_000666764.1 shikimate dehydrogenase -
  SaO322_RS08015 (SaO322_01481) yqeH 1600841..1601941 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25764.51 Da        Isoelectric Point: 9.5413

>NTDB_id=354538 SaO322_RS07980 WP_078061108.1 1596782..1597468(-) (comEA) [Staphylococcus aureus strain B119]
MVLLYQFLLRYKDFLTQCKLYIISAVVLIMVLIGFIFWRQDDYTTRNFENKDTALKQSTSEISSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSEWMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=354538 SaO322_RS07980 WP_078061108.1 1596782..1597468(-) (comEA) [Staphylococcus aureus strain B119]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGCAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTACAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAATTAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATGGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.916

99.561

0.965
  comEA Staphylococcus aureus N315

96.916

99.561

0.965

Multiple sequence alignment