Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GPW70_RS13360 Genome accession   NZ_CP046740
Coordinates   1855379..1856023 (-) Length   214 a.a.
NCBI ID   WP_001890391.1    Uniprot ID   Q9KSP3
Organism   Vibrio cholerae strain 3566-06     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1850379..1861023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS13320 - 1850449..1850934 (+) 486 WP_002043720.1 GNAT family N-acetyltransferase -
  GPW70_RS13325 - 1850931..1852049 (-) 1119 WP_001190450.1 GGDEF domain-containing protein -
  GPW70_RS13350 pgsA 1852942..1853499 (-) 558 WP_001211977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GPW70_RS13355 uvrC 1853547..1855379 (-) 1833 WP_032472824.1 excinuclease ABC subunit UvrC -
  GPW70_RS13360 letA 1855379..1856023 (-) 645 WP_001890391.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GPW70_RS13365 - 1856399..1858762 (+) 2364 WP_032472823.1 DNA polymerase II -
  GPW70_RS13370 - 1858734..1860833 (-) 2100 WP_032472822.1 PTS sugar transporter subunit IIC/EAL domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23751.50 Da        Isoelectric Point: 6.4970

>NTDB_id=354516 GPW70_RS13360 WP_001890391.1 1855379..1856023(-) (letA) [Vibrio cholerae strain 3566-06]
MISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGIGGLEATKKLLRVNPDIKIIV
LTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASENPFADLSERELQIMLMI
TKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGILDTEKL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=354516 GPW70_RS13360 WP_001890391.1 1855379..1856023(-) (letA) [Vibrio cholerae strain 3566-06]
TTGATTAGTGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAAAGTAGCAGGGGAAGCTGACAGCGGTGAAGAAGCAGTAAAATGGTGCCGTACTAACCATGCGGATGTCATTTTAATGG
ATATGAACATGCCGGGTATTGGTGGCTTGGAAGCAACCAAGAAGCTGTTGCGTGTTAATCCGGACATTAAAATTATCGTA
TTGACGGTACATACCGAAAATCCGTTCCCAACCAAAGTGATGCAAGCGGGTGCCGCAGGTTATCTCACGAAGGGCGCGGC
ACCGGATGAAATGGTCAATGCAATCCGTATCGTTCACAGTGGTCAGCGTTATATTTCTCCAGAAATTGCGCAGCAAATGG
CATTGAGCCAGTTTTCGCCAGCGTCTGAAAATCCTTTTGCTGACCTGTCCGAACGCGAATTACAGATCATGCTGATGATC
ACGAAAGGTCAGAAGGTGACGGACATTTCTGAACAGCTCAGTCTGAGTCCGAAAACCGTTAACAGCTACCGCTACCGTTT
GTTCGCCAAGCTGAATATCAACGGTGATGTGGAATTAACCCACTTAGCTATCCGACACGGGATCTTAGATACTGAGAAGT
TATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KSP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.905

98.131

0.509
  letA Legionella pneumophila strain ERS1305867

51.905

98.131

0.509