Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GYMC10_RS26155 Genome accession   NC_013406
Coordinates   5966347..5966787 (-) Length   146 a.a.
NCBI ID   WP_015737282.1    Uniprot ID   -
Organism   Paenibacillus sp. Y412MC10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5961347..5971787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYMC10_RS26135 (GYMC10_5287) - 5961621..5962070 (+) 450 WP_015737276.1 hypothetical protein -
  GYMC10_RS32365 - 5962054..5962266 (-) 213 WP_144374278.1 hypothetical protein -
  GYMC10_RS32055 (GYMC10_5288) - 5962323..5962421 (-) 99 WP_015737277.1 YjcZ family sporulation protein -
  GYMC10_RS32060 (GYMC10_5289) - 5962552..5962941 (-) 390 WP_015737278.1 YmaF family protein -
  GYMC10_RS26140 (GYMC10_5290) - 5962962..5963723 (-) 762 WP_235201881.1 DUF2935 domain-containing protein -
  GYMC10_RS26145 (GYMC10_5291) - 5963911..5964810 (-) 900 WP_036665214.1 LysR family transcriptional regulator -
  GYMC10_RS26150 (GYMC10_5292) - 5964989..5965627 (-) 639 WP_015737281.1 HD domain-containing protein -
  GYMC10_RS26155 (GYMC10_5293) nucA/comI 5966347..5966787 (-) 441 WP_015737282.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GYMC10_RS26160 (GYMC10_5295) groL 5967446..5969074 (-) 1629 WP_009593977.1 chaperonin GroEL -
  GYMC10_RS26165 (GYMC10_5296) groES 5969136..5969417 (-) 282 WP_006212454.1 co-chaperone GroES -
  GYMC10_RS26170 (GYMC10_5297) - 5969808..5970626 (-) 819 WP_015737284.1 nucleotidyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16189.21 Da        Isoelectric Point: 4.3837

>NTDB_id=35440 GYMC10_RS26155 WP_015737282.1 5966347..5966787(-) (nucA/comI) [Paenibacillus sp. Y412MC10]
MKKLFMKFGTVVLSLLLVWLVLNYFPELDDSDVNPPIPGTVVELEFPADKYPETADHIKKAIESGHSDICTIDRTGAEDN
RSSSLKGIPTKKGYDRDEWPMAMCAEGGDGASIEYIDPSDNRGAGSWVGNYLEGYPDGTQVHFIFR

Nucleotide


Download         Length: 441 bp        

>NTDB_id=35440 GYMC10_RS26155 WP_015737282.1 5966347..5966787(-) (nucA/comI) [Paenibacillus sp. Y412MC10]
ATGAAAAAGTTATTCATGAAATTTGGAACAGTGGTCTTATCTTTATTACTGGTTTGGTTGGTCCTTAATTATTTTCCGGA
GTTAGATGACAGTGATGTAAACCCACCAATACCGGGTACCGTTGTCGAATTAGAGTTTCCAGCGGATAAATATCCTGAGA
CGGCGGATCACATAAAAAAGGCCATTGAATCCGGCCATTCCGATATTTGTACCATTGATCGAACTGGTGCAGAGGATAAC
AGGAGTTCTTCACTAAAGGGAATCCCTACGAAAAAAGGATATGATCGCGATGAGTGGCCGATGGCCATGTGTGCCGAAGG
AGGAGACGGTGCAAGTATCGAATACATAGATCCATCTGACAATCGAGGAGCAGGCAGCTGGGTAGGTAACTATTTGGAGG
GATACCCGGACGGTACCCAAGTACATTTCATTTTTAGATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(51-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.932

70.548

0.486

Multiple sequence alignment