Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E4T21_RS02050 | Genome accession | NZ_CP038437 |
| Coordinates | 468953..469615 (+) | Length | 220 a.a. |
| NCBI ID | WP_149283061.1 | Uniprot ID | A0A5C1NDC2 |
| Organism | Halomonas binhaiensis strain Y2R2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 463953..474615
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4T21_RS02040 (E4T21_02010) | uvrA | 464289..467189 (-) | 2901 | WP_149283057.1 | excinuclease ABC subunit UvrA | - |
| E4T21_RS02045 (E4T21_02015) | - | 467364..468749 (+) | 1386 | WP_149283059.1 | MFS transporter | - |
| E4T21_RS02050 (E4T21_02020) | ssb | 468953..469615 (+) | 663 | WP_149283061.1 | single-stranded DNA-binding protein | Machinery gene |
| E4T21_RS02055 (E4T21_02025) | - | 469718..470689 (+) | 972 | WP_149283063.1 | LacI family DNA-binding transcriptional regulator | - |
| E4T21_RS02060 (E4T21_02030) | - | 470755..471534 (+) | 780 | WP_149283065.1 | sulfite exporter TauE/SafE family protein | - |
| E4T21_RS02065 (E4T21_02035) | - | 471547..473268 (-) | 1722 | WP_149283067.1 | 2-isopropylmalate synthase | - |
| E4T21_RS02070 (E4T21_02040) | - | 473546..474328 (+) | 783 | WP_149283069.1 | AraC family transcriptional regulator | - |
Sequence
Protein
Download Length: 220 a.a. Molecular weight: 23224.21 Da Isoelectric Point: 4.9363
>NTDB_id=354262 E4T21_RS02050 WP_149283061.1 468953..469615(+) (ssb) [Halomonas binhaiensis strain Y2R2]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATTDNWMDRQSGQRQERTEWHRVVLFNKLAEIAQQYVKKGAKLYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGRGDGGQQAGGFGGGQQGGYGAQQGGGFGGGQQAAYGAAAPQQAPAPQQQ
SNFAGQQSGGFSGQQGGGYGGGQPAQQPQQPQQPSSGGQKGGFGAPDPGSFDDFDDEIPF
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATTDNWMDRQSGQRQERTEWHRVVLFNKLAEIAQQYVKKGAKLYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGRGDGGQQAGGFGGGQQGGYGAQQGGGFGGGQQAAYGAAAPQQAPAPQQQ
SNFAGQQSGGFSGQQGGGYGGGQPAQQPQQPQQPSSGGQKGGFGAPDPGSFDDFDDEIPF
Nucleotide
Download Length: 663 bp
>NTDB_id=354262 E4T21_RS02050 WP_149283061.1 468953..469615(+) (ssb) [Halomonas binhaiensis strain Y2R2]
ATGGCCCGTGGCATCAACAAGGTCATCCTCATCGGTAACCTCGGTCAGGATCCTGAGGTCCGTTTCACTCCGTCCGGTAC
CGCGGTGGCCAACCTCAACCTGGCGACGACCGATAACTGGATGGATCGCCAGAGCGGGCAGCGTCAGGAGCGGACCGAGT
GGCACCGTGTGGTGCTGTTCAACAAGCTGGCTGAAATCGCCCAGCAATACGTCAAGAAGGGCGCCAAACTGTATATCGAA
GGCCGCCTGCAGACTCGCAAGTGGCAGGACCAGAATGGCCAGGATCGTTACTCCACCGAGATCGTTGCCAACGACATGCA
GATGCTCGATGGGCGTGGTGATGGTGGCCAACAGGCTGGTGGATTCGGCGGTGGCCAGCAAGGAGGTTATGGAGCTCAGC
AGGGTGGCGGCTTTGGCGGTGGCCAACAGGCGGCTTATGGCGCAGCTGCGCCTCAGCAGGCCCCGGCCCCACAGCAGCAG
TCCAACTTCGCCGGCCAGCAGAGCGGCGGTTTCAGTGGCCAACAAGGTGGCGGTTATGGTGGCGGCCAGCCGGCACAACA
GCCCCAGCAGCCTCAGCAGCCCAGTTCAGGCGGCCAGAAGGGCGGTTTCGGTGCTCCGGATCCCGGCAGCTTCGATGATT
TTGATGACGAGATCCCGTTCTAA
ATGGCCCGTGGCATCAACAAGGTCATCCTCATCGGTAACCTCGGTCAGGATCCTGAGGTCCGTTTCACTCCGTCCGGTAC
CGCGGTGGCCAACCTCAACCTGGCGACGACCGATAACTGGATGGATCGCCAGAGCGGGCAGCGTCAGGAGCGGACCGAGT
GGCACCGTGTGGTGCTGTTCAACAAGCTGGCTGAAATCGCCCAGCAATACGTCAAGAAGGGCGCCAAACTGTATATCGAA
GGCCGCCTGCAGACTCGCAAGTGGCAGGACCAGAATGGCCAGGATCGTTACTCCACCGAGATCGTTGCCAACGACATGCA
GATGCTCGATGGGCGTGGTGATGGTGGCCAACAGGCTGGTGGATTCGGCGGTGGCCAGCAAGGAGGTTATGGAGCTCAGC
AGGGTGGCGGCTTTGGCGGTGGCCAACAGGCGGCTTATGGCGCAGCTGCGCCTCAGCAGGCCCCGGCCCCACAGCAGCAG
TCCAACTTCGCCGGCCAGCAGAGCGGCGGTTTCAGTGGCCAACAAGGTGGCGGTTATGGTGGCGGCCAGCCGGCACAACA
GCCCCAGCAGCCTCAGCAGCCCAGTTCAGGCGGCCAGAAGGGCGGTTTCGGTGCTCCGGATCCCGGCAGCTTCGATGATT
TTGATGACGAGATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
48 |
100 |
0.491 |
| ssb | Glaesserella parasuis strain SC1401 |
43.836 |
99.545 |
0.436 |