Detailed information NTG0035414

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ADEG_RS04875
• Genome accession: NC_013385
• Coordinates: 973933..974838 (+)
• Length: 301 a.a.
• NCBI ID: WP_015738974.1
• Uniprot ID: C9RCX0
• Organism: Ammonifex degensii KC4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	962668..974838	973933..974838	within	0

Gene organization within MGE regions

Location: 962668..974838

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ADEG_RS04815 (Adeg_0950)	hslO	963806..964711 (+)	906	WP_015738963.1	Hsp33 family molecular chaperone HslO	-
ADEG_RS04820 (Adeg_0951)	-	964775..965314 (+)	540	WP_015738964.1	DUF177 domain-containing protein	-
ADEG_RS04825 (Adeg_0952)	rpmF	965295..965477 (+)	183	WP_015738965.1	50S ribosomal protein L32	-
ADEG_RS04830 (Adeg_0953)	-	965668..966215 (+)	548	Protein_949	IS607 family transposase	-
ADEG_RS04835 (Adeg_0954)	-	966212..967807 (+)	1596	WP_015738966.1	IS200/IS605 family accessory protein TnpB-related protein	-
ADEG_RS04840 (Adeg_0955)	plsX	967899..968912 (+)	1014	WP_015738967.1	phosphate acyltransferase PlsX	-
ADEG_RS04845 (Adeg_0956)	-	968909..969904 (+)	996	WP_015738968.1	beta-ketoacyl-ACP synthase III	-
ADEG_RS04850 (Adeg_0957)	fabD	969916..970860 (+)	945	WP_015738969.1	ACP S-malonyltransferase	-
ADEG_RS04855 (Adeg_0958)	fabG	970857..971600 (+)	744	WP_015738970.1	3-oxoacyl-[acyl-carrier-protein] reductase	-
ADEG_RS04860 (Adeg_0959)	acpP	971637..971879 (+)	243	WP_015738971.1	acyl carrier protein	-
ADEG_RS04865 (Adeg_0960)	fabF	971906..973147 (+)	1242	WP_015738972.1	beta-ketoacyl-ACP synthase II	-
ADEG_RS04870 (Adeg_0961)	rnc	973239..973946 (+)	708	WP_015738973.1	ribonuclease III	-
ADEG_RS04875 (Adeg_0962)	pilA	973933..974838 (+)	906	WP_015738974.1	signal recognition particle-docking protein FtsY	Machinery gene

Sequence

Protein

• Length: 301 a.a.
• Molecular weight: 32639.95 Da
• Isoelectric Point: 5.8264

>NTDB_id=35414 ADEG_RS04875 WP_015738974.1 973933..974838(+) (pilA) [Ammonifex degensii KC4]
MGLFDRLKASLGKVRETFTAKIDNVLRRRKIDEELYEELEDTLILADVGVPATEELLEKLKARVKAERVEEVEDLRRLLQ
EEILHLLGEPVPLLLPPSPPAVILLVGVNGTGKTTTAGKLAYFFRQQGKKVLLAAADTFRAAAIDQLEIWAEKSGSLFVR
QKEGSDPAAVVFDALQAAKARGVDVVIADTAGRLHTKSHLMAELGKIVRVAAREVEGAPHEVLLVLDATTGQNALSQARL
FKEVTGVTGIVLTKLDGTAKGGVVIAIRKELGLPVKFIGTGEKIEDLAPFDPAEFVKAIFD

Nucleotide

• Length: 906 bp

>NTDB_id=35414 ADEG_RS04875 WP_015738974.1 973933..974838(+) (pilA) [Ammonifex degensii KC4]
ATGGGACTTTTTGACCGGCTGAAAGCTAGCCTGGGGAAGGTCAGAGAGACCTTCACAGCTAAGATCGACAATGTGCTCCG
GCGGCGGAAGATCGACGAGGAGCTCTACGAGGAGCTGGAGGATACCCTTATCCTGGCCGACGTGGGCGTGCCGGCCACCG
AGGAACTCCTGGAAAAGCTCAAGGCGCGAGTGAAGGCCGAGCGCGTGGAGGAAGTGGAGGATCTGCGCCGTCTTCTGCAG
GAGGAAATCCTTCACCTTTTAGGTGAGCCGGTTCCCCTTCTCTTGCCTCCTTCGCCGCCGGCGGTAATCCTGCTGGTGGG
AGTCAACGGTACAGGCAAGACCACCACGGCGGGGAAGCTCGCTTACTTCTTCCGCCAGCAGGGGAAGAAGGTGCTGCTGG
CGGCCGCCGACACCTTCCGGGCAGCGGCCATCGACCAACTGGAGATTTGGGCCGAGAAGTCGGGCTCGCTCTTCGTGCGG
CAGAAAGAGGGGTCCGACCCGGCAGCAGTGGTCTTTGACGCCCTACAGGCGGCCAAAGCGCGGGGAGTGGACGTGGTCAT
CGCCGATACCGCTGGAAGACTCCACACCAAAAGCCACCTGATGGCGGAACTCGGCAAGATTGTGCGGGTGGCGGCACGGG
AGGTGGAGGGGGCGCCCCATGAAGTCTTGCTGGTGCTGGATGCCACTACGGGCCAGAATGCCTTAAGCCAGGCCCGTCTT
TTCAAAGAAGTCACCGGAGTCACCGGTATTGTTCTCACCAAGCTCGACGGCACGGCCAAGGGGGGCGTGGTGATTGCCAT
AAGGAAGGAACTGGGGCTGCCCGTGAAGTTCATCGGAACCGGGGAGAAGATCGAGGATTTGGCCCCCTTTGACCCGGCCG
AATTCGTGAAAGCCATTTTCGATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (100-300)

• SRP54-type protein, helical bundle domain (SRP54_N) (19-83)

3D structure

• AlphaFold DB: C9RCX0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.684	100	0.492