Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GPA00_RS07595 Genome accession   NZ_CP046629
Coordinates   1529189..1530259 (+) Length   356 a.a.
NCBI ID   WP_157328174.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1524189..1535259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS07580 (GPA00_07580) - 1525245..1526981 (+) 1737 Protein_1425 ABC transporter ATP-binding protein -
  GPA00_RS07585 (GPA00_07585) - 1527046..1527759 (+) 714 WP_157328172.1 ABC transporter transmembrane domain-containing protein -
  GPA00_RS07590 (GPA00_07590) - 1527899..1528669 (+) 771 WP_232524193.1 ATP-binding cassette domain-containing protein -
  GPA00_RS07595 (GPA00_07595) xerS 1529189..1530259 (+) 1071 WP_157328174.1 tyrosine recombinase XerS Machinery gene
  GPA00_RS07600 (GPA00_07600) - 1530423..1531367 (-) 945 WP_157328176.1 sensor histidine kinase -
  GPA00_RS07605 (GPA00_07605) braR 1531364..1532026 (-) 663 WP_157328178.1 response regulator transcription factor Regulator
  GPA00_RS07610 (GPA00_07610) - 1532126..1534111 (-) 1986 WP_157328180.1 FtsX-like permease family protein -
  GPA00_RS07615 (GPA00_07615) - 1534113..1534865 (-) 753 WP_033152622.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41344.58 Da        Isoelectric Point: 9.7127

>NTDB_id=354129 GPA00_RS07595 WP_157328174.1 1529189..1530259(+) (xerS) [Streptococcus equinus strain CNU G6]
MKREKLLEKIDELKKIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWILESGISNAEKIADVELTTLEHLSKKDME
SFVLYLRERPSLNTYSTKQGVSQTTINRTLSALSSLFKYLTEEVEDENGDPYFYRNVMKKIATKKKKETLAARAENIKGK
LFLGDETMAFIEYIDKEYQNKLSHRALSSFQKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLNMMVIEVTRKGGKRDS
VNIAAFAKPYLEEYLKIRAPRYKAEKQDQALFLTEYRGVPNRIDASSIEKLVAKYSQDFKVRVTPHKLRHTLATRLYGAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=354129 GPA00_RS07595 WP_157328174.1 1529189..1530259(+) (xerS) [Streptococcus equinus strain CNU G6]
ATGAAACGTGAAAAATTACTTGAAAAAATTGATGAATTAAAAAAAATAATGCCCTGGTATGTCCTTGACTATTACCAATC
AAAACTTTCTGTGCCATATAGTTTTACAACCTTGTACGAATATCTTAAGGAATACAGACGATTTTTTGAATGGATTCTTG
AATCAGGAATTTCAAATGCTGAAAAAATTGCTGACGTTGAGTTAACAACTTTAGAGCATTTGTCTAAAAAAGATATGGAA
TCCTTCGTTCTCTATTTGCGTGAACGACCTTCGCTAAATACTTATTCAACTAAGCAAGGGGTCTCTCAGACCACTATCAA
TCGCACGTTATCAGCGCTTTCAAGCCTTTTTAAATATCTAACAGAAGAGGTCGAGGATGAAAATGGTGACCCCTACTTCT
ATCGAAATGTCATGAAAAAGATTGCAACTAAGAAGAAGAAAGAAACTTTAGCTGCTCGTGCTGAAAACATCAAAGGAAAG
CTATTCTTGGGAGATGAGACGATGGCGTTTATCGAGTATATTGACAAAGAATATCAGAATAAGCTCTCTCACCGAGCCCT
CTCCTCCTTCCAGAAAAATAAGGAGCGAGATTTAGCTATTATTGCACTTCTTCTTGCTTCTGGTGTCCGTCTTTCTGAAG
CAGTTAATCTTGATTTAAAAGATTTAAACCTCAATATGATGGTTATTGAAGTCACTCGTAAAGGTGGAAAACGAGACTCT
GTTAACATTGCTGCTTTTGCTAAACCATATCTCGAAGAATACTTAAAAATTCGTGCACCTCGTTATAAAGCAGAAAAACA
AGATCAAGCACTATTTTTAACAGAATACCGTGGTGTTCCAAATCGTATTGATGCATCAAGTATTGAAAAATTAGTAGCTA
AATACTCACAAGACTTTAAAGTTCGAGTGACACCCCACAAGCTACGTCACACTTTGGCAACAAGATTGTATGGGGCTACT
AAATCTCAAGTACTCGTCAGCCACCAATTAGGGCATGCAAGTACACAAGTTACTGACTTATATACCCATATTGTCAATGA
TGAACAGAAAAACGCTTTGGACAAATTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(59-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834