Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPA00_RS05885 Genome accession   NZ_CP046629
Coordinates   1161210..1161806 (+) Length   198 a.a.
NCBI ID   WP_021141898.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1156210..1166806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS05865 (GPA00_05865) - 1156768..1157460 (+) 693 WP_021141894.1 phosphoglycerate mutase -
  GPA00_RS05870 (GPA00_05870) - 1157649..1158170 (+) 522 WP_021141895.1 transcription repressor NadR -
  GPA00_RS05875 (GPA00_05875) - 1158351..1158899 (+) 549 WP_021141896.1 hypothetical protein -
  GPA00_RS05880 (GPA00_05880) pbp2b 1159071..1161149 (+) 2079 WP_024344261.1 penicillin-binding protein PBP2B -
  GPA00_RS05885 (GPA00_05885) recR 1161210..1161806 (+) 597 WP_021141898.1 recombination mediator RecR Machinery gene
  GPA00_RS05890 (GPA00_05890) - 1161905..1162408 (+) 504 WP_050482984.1 MarR family winged helix-turn-helix transcriptional regulator -
  GPA00_RS05895 (GPA00_05895) - 1162386..1163618 (+) 1233 WP_198362640.1 acyl-CoA thioesterase/BAAT N-terminal domain-containing protein -
  GPA00_RS05900 (GPA00_05900) - 1163850..1164896 (+) 1047 WP_157327842.1 D-alanine--D-alanine ligase -
  GPA00_RS05905 (GPA00_05905) - 1164976..1165533 (-) 558 WP_074628871.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21640.93 Da        Isoelectric Point: 4.9171

>NTDB_id=354112 GPA00_RS05885 WP_021141898.1 1161210..1161806(+) (recR) [Streptococcus equinus strain CNU G6]
MLYPAPIAKLIDSFTKLPGIGIKTATRLAFYTIGMSDEDVNEFAKNLLSAKRELTYCSVCGNLTDDDPCSICTDKTRKRS
VILVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGVGPDDINLKSLITRLMDSEVSEVIIATNATADGEATAMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=354112 GPA00_RS05885 WP_021141898.1 1161210..1161806(+) (recR) [Streptococcus equinus strain CNU G6]
ATGCTTTATCCAGCACCTATTGCAAAATTAATTGATAGTTTTACAAAACTACCTGGAATCGGGATTAAAACAGCAACTCG
CTTAGCTTTCTATACTATTGGAATGTCTGATGAAGATGTGAATGAATTTGCCAAAAATTTGTTATCAGCTAAGCGTGAAT
TGACTTATTGTTCTGTCTGTGGCAATCTAACTGATGACGACCCTTGCAGTATTTGTACTGATAAAACACGAAAACGTTCA
GTGATTTTGGTCGTTGAAGATTCAAAAGATGTGTCTGCCATGGAAAAAATTCAAGAATATCATGGGCTTTATCACGTTTT
GCATGGATTGATTTCACCGATGAACGGCGTTGGACCTGATGATATTAATTTGAAATCATTAATCACACGTTTGATGGACA
GCGAAGTGAGCGAAGTCATCATTGCAACTAATGCTACAGCAGACGGCGAGGCAACTGCTATGTATATTTCACGTGTCTTA
AAACCAGCAGGCATTAAAGTGACACGCTTAGCACGTGGGCTAGCTGTTGGGTCTGATATCGAATACGCTGACGAAGTGAC
CCTACTTCGCGCCATTGAAAATCGAACAGAATTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

65.152

100

0.652
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475