Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ADEG_RS01985 Genome accession   NC_013385
Coordinates   405540..406871 (+) Length   443 a.a.
NCBI ID   WP_015738427.1    Uniprot ID   C9RBC2
Organism   Ammonifex degensii KC4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 400540..411871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADEG_RS01965 (Adeg_0392) - 401115..402149 (+) 1035 WP_245527930.1 sulfite exporter TauE/SafE family protein -
  ADEG_RS01970 (Adeg_0393) nth 402151..402873 (+) 723 WP_015738424.1 endonuclease III -
  ADEG_RS01975 (Adeg_0394) - 402887..403414 (+) 528 WP_015738425.1 macro domain-containing protein -
  ADEG_RS01980 (Adeg_0395) - 403418..405547 (+) 2130 WP_015738426.1 PBP1A family penicillin-binding protein -
  ADEG_RS01985 (Adeg_0396) radA 405540..406871 (+) 1332 WP_015738427.1 DNA repair protein RadA Machinery gene
  ADEG_RS01990 (Adeg_0397) disA 406894..407952 (+) 1059 WP_015738428.1 DNA integrity scanning diadenylate cyclase DisA -
  ADEG_RS11635 (Adeg_0398) - 407897..409099 (-) 1203 WP_015738429.1 integrase core domain-containing protein -
  ADEG_RS02005 (Adeg_0399) - 409312..409791 (+) 480 WP_015738430.1 CarD family transcriptional regulator -
  ADEG_RS02010 (Adeg_0400) - 409962..411071 (+) 1110 WP_015738431.1 PIN domain-containing protein -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 48028.90 Da        Isoelectric Point: 7.7905

>NTDB_id=35409 ADEG_RS01985 WP_015738427.1 405540..406871(+) (radA) [Ammonifex degensii KC4]
MAKERFQCLICGYQSTRWLGRCPECGSWDSFSAGTAKDSGKELAAVYPLQEIEGEEERLQVGMEEFDRVLGGGIVPGSLI
LVGGDPGIGKSTLLLQVASQLGRYGQVLYVSGEESVRQVASRARRLRLEASSLLLAAATDVEVIKEQVERLRPCALVVDS
IQTLVHPRVQAIPGSVAQVRECIGVLQQLAKGLNLPIMVIGHVTKEGILAGPRLLEHIVDVVLYLEGDRYQSYRLLRGVK
NRYGATHEIGVFTMTERGMVPVVNPSALFLAGSQADNSVGAAVVPTLEGTRPLLVEIQALVSTSYYSLPRRMTTGLDFNR
TLLLLAVLEKRLGLRLSSCDVYLNVVGGMKLIDPGADLAAALAVVSSYRELPFPRDVVVVGEVGLTGEVRPVRLLELRLK
EAAKLGFSRAVVGRSSCCRSLPEKFTLIPVASLGEAIEVLWQR

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=35409 ADEG_RS01985 WP_015738427.1 405540..406871(+) (radA) [Ammonifex degensii KC4]
ATGGCTAAAGAACGGTTTCAGTGCCTGATTTGTGGCTACCAGAGCACGCGCTGGCTGGGGCGCTGCCCGGAGTGCGGGAG
CTGGGACTCTTTCTCTGCCGGTACTGCCAAAGATTCCGGTAAAGAGCTGGCCGCCGTCTACCCCCTGCAGGAGATAGAGG
GTGAGGAAGAGCGCCTGCAGGTGGGGATGGAAGAGTTTGACCGGGTGCTGGGCGGAGGGATAGTCCCGGGTTCCCTTATT
CTGGTGGGGGGAGACCCGGGCATAGGCAAATCCACCTTGCTCTTGCAGGTGGCCTCTCAACTCGGTAGGTATGGACAAGT
TCTCTACGTGTCCGGGGAGGAATCGGTGCGCCAGGTGGCATCAAGGGCGCGGCGCTTGCGACTGGAAGCTTCCTCCCTGT
TGCTGGCAGCGGCCACCGACGTGGAAGTGATCAAGGAGCAGGTAGAACGCCTAAGACCCTGCGCGCTGGTGGTAGACTCC
ATCCAAACCCTGGTGCATCCCCGGGTGCAGGCGATCCCGGGAAGTGTGGCTCAGGTGCGGGAATGCATCGGGGTGTTGCA
ACAGCTGGCTAAAGGCTTAAACCTCCCCATCATGGTGATAGGGCACGTAACCAAGGAGGGTATTCTGGCGGGGCCGCGTC
TGCTCGAGCACATCGTGGACGTGGTGCTTTACCTGGAGGGGGACCGCTACCAATCCTACCGCCTCCTGCGGGGGGTGAAA
AACCGCTACGGTGCCACACACGAGATAGGGGTCTTCACTATGACCGAGAGGGGCATGGTGCCGGTGGTCAACCCTTCGGC
CCTTTTCTTGGCCGGGAGCCAAGCCGATAATTCAGTAGGGGCGGCGGTGGTACCCACCCTAGAGGGGACACGCCCTTTGT
TGGTGGAGATCCAGGCCTTGGTAAGCACTAGCTACTACTCTTTGCCCCGGCGTATGACCACCGGGCTCGATTTTAACCGG
ACCCTTTTGCTCCTGGCCGTTTTGGAGAAGCGCCTGGGACTGCGTCTGAGCTCCTGCGATGTATACCTGAACGTGGTAGG
GGGGATGAAGCTGATAGATCCGGGGGCCGATCTAGCGGCGGCGCTGGCCGTCGTCTCCAGCTACCGGGAGCTCCCCTTCC
CCCGGGACGTGGTGGTGGTAGGTGAGGTAGGGTTGACGGGAGAGGTGCGCCCCGTGCGCCTTCTGGAACTGAGGCTTAAA
GAGGCGGCCAAGCTGGGTTTTTCCCGGGCGGTAGTAGGAAGGTCTAGCTGTTGCCGGTCTTTGCCGGAAAAATTTACCTT
GATTCCGGTAGCTTCCTTGGGAGAGGCCATAGAGGTTCTCTGGCAGAGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-207)

Subunit ChlI of Mg-chelatase (ChlI)

(357-414)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(6-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9RBC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

49.448

100

0.506
  radA Streptococcus pneumoniae D39

49.448

100

0.506
  radA Streptococcus pneumoniae R6

49.448

100

0.506
  radA Streptococcus pneumoniae TIGR4

49.448

100

0.506
  radA Streptococcus mitis NCTC 12261

49.227

100

0.503
  radA Streptococcus mitis SK321

49.227

100

0.503
  radA Bacillus subtilis subsp. subtilis str. 168

48.667

100

0.494

Multiple sequence alignment