Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   GPA00_RS03660 Genome accession   NZ_CP046629
Coordinates   709348..709641 (+) Length   97 a.a.
NCBI ID   WP_268894141.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 704348..714641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS03625 (GPA00_03625) - 705589..705957 (+) 369 WP_094140982.1 DUF1033 family protein -
  GPA00_RS03630 (GPA00_03630) comGA 706026..706967 (+) 942 WP_027968018.1 competence type IV pilus ATPase ComGA Machinery gene
  GPA00_RS03635 (GPA00_03635) comGB 706891..707934 (+) 1044 WP_167697815.1 competence type IV pilus assembly protein ComGB Machinery gene
  GPA00_RS03640 (GPA00_03640) comGC 707934..708236 (+) 303 WP_021141433.1 competence type IV pilus major pilin ComGC Machinery gene
  GPA00_RS03645 (GPA00_03645) comGD 708211..708651 (+) 441 WP_157327520.1 competence type IV pilus minor pilin ComGD Machinery gene
  GPA00_RS03650 (GPA00_03650) comGE 708605..708898 (+) 294 WP_074629067.1 competence type IV pilus minor pilin ComGE Machinery gene
  GPA00_RS03655 (GPA00_03655) comGF 708882..709319 (+) 438 WP_157327522.1 competence type IV pilus minor pilin ComGF Machinery gene
  GPA00_RS03660 (GPA00_03660) comGG 709348..709641 (+) 294 WP_268894141.1 competence type IV pilus minor pilin ComGG Machinery gene
  GPA00_RS03665 (GPA00_03665) comGH 709695..710651 (+) 957 WP_024344497.1 class I SAM-dependent methyltransferase Machinery gene
  GPA00_RS03670 (GPA00_03670) - 710705..711904 (+) 1200 WP_045798327.1 acetate kinase -
  GPA00_RS03675 (GPA00_03675) - 712062..712259 (+) 198 WP_027968026.1 helix-turn-helix transcriptional regulator -
  GPA00_RS03680 (GPA00_03680) - 712315..712767 (+) 453 WP_074483978.1 ABC transporter permease -
  GPA00_RS03685 (GPA00_03685) - 712779..713414 (+) 636 WP_141348477.1 CPBP family intramembrane glutamic endopeptidase -
  GPA00_RS03690 (GPA00_03690) proC 713466..714236 (-) 771 WP_157327526.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11186.68 Da        Isoelectric Point: 6.7171

>NTDB_id=354084 GPA00_RS03660 WP_268894141.1 709348..709641(+) (comGG) [Streptococcus equinus strain CNU G6]
MAAIFALLLQFYLGRVVASERQHQAQLKYAQAYLMAEISRDYAKDSSGKCYFDKGVVSYQRENGVLVETVVLENKEDFHY
TFSLPKKSEQTIEKESH

Nucleotide


Download         Length: 294 bp        

>NTDB_id=354084 GPA00_RS03660 WP_268894141.1 709348..709641(+) (comGG) [Streptococcus equinus strain CNU G6]
ATGGCAGCTATATTTGCTTTGTTGTTACAGTTTTATTTAGGGCGCGTGGTAGCAAGTGAACGTCAGCATCAGGCACAATT
AAAGTACGCGCAAGCTTATTTGATGGCAGAAATCAGCAGGGATTATGCTAAAGATTCTTCAGGTAAGTGTTATTTTGATA
AAGGTGTTGTCAGCTACCAACGTGAAAATGGGGTGCTAGTTGAGACAGTAGTTTTAGAGAATAAAGAGGACTTTCACTAC
ACTTTTTCTCTTCCAAAAAAATCTGAACAAACCATTGAAAAAGAAAGTCACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

48.193

85.567

0.412
  comGG Streptococcus mutans UA159

48.193

85.567

0.412