Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   GPA00_RS02890 Genome accession   NZ_CP046629
Coordinates   589988..591082 (+) Length   364 a.a.
NCBI ID   WP_074451157.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584988..596082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS02865 (GPA00_02865) pgsA 585421..585975 (-) 555 WP_004233663.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GPA00_RS02870 (GPA00_02870) - 585985..586914 (-) 930 WP_157327486.1 helix-turn-helix domain-containing protein -
  GPA00_RS02875 (GPA00_02875) yfmH 586981..588270 (-) 1290 WP_157327487.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GPA00_RS02880 (GPA00_02880) yfmF 588271..589515 (-) 1245 WP_157327488.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  GPA00_RS02885 (GPA00_02885) yaaA 589602..589985 (+) 384 WP_021143377.1 S4 domain-containing protein YaaA -
  GPA00_RS02890 (GPA00_02890) recF 589988..591082 (+) 1095 WP_074451157.1 DNA replication/repair protein RecF Machinery gene
  GPA00_RS02895 (GPA00_02895) - 591150..592016 (-) 867 WP_033153619.1 GRP family sugar transporter -
  GPA00_RS02900 (GPA00_02900) guaB 592258..593739 (-) 1482 WP_021143381.1 IMP dehydrogenase -
  GPA00_RS02905 (GPA00_02905) trpS 593967..594989 (-) 1023 WP_004233676.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42046.41 Da        Isoelectric Point: 8.8863

>NTDB_id=354070 GPA00_RS02890 WP_074451157.1 589988..591082(+) (recF) [Streptococcus equinus strain CNU G6]
MWIQKIALKNYRNYLNNELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRLDKELIHFQEKELRVSGNLQRSTGV
VPLEIDLSSKGRVTKINHLKQAKLSDYIGVMTVVLFAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NTYLKTAEKVDIDFLAVLDEQLADFGSRVMEHRLDFIANLEKEADRYHYTISDGLEHLKIHYLSSVPFDKKSDIKEQFLK
TLEKNHKRDIFKKNTGAGPHRDDLEFFINDMPANFGSQGQHRSLILSLKMAEIELIKNVTGDYPILLLDDVMSELDNYRQ
TELLKMIIAKNVQTFITTTSLEHLSQLPKELKIFTVTKGHIQEN

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=354070 GPA00_RS02890 WP_074451157.1 589988..591082(+) (recF) [Streptococcus equinus strain CNU G6]
ATGTGGATTCAAAAAATAGCCTTAAAAAATTACCGTAATTATTTAAATAATGAACTTGAATTTTCCCCTGGACTCAATGT
TTTTATTGGGAAAAATGCCCAAGGAAAAACTAATTTCTTAGAAGCTATTTATTTCTTATCTTTAACTCGCAGCCACCGTA
CACGCTTAGACAAAGAGCTGATTCATTTTCAAGAAAAAGAACTCCGCGTCTCAGGTAATTTACAACGCTCAACTGGAGTA
GTTCCTCTAGAAATCGACCTTTCAAGCAAAGGACGTGTTACCAAAATCAATCACTTAAAACAAGCTAAATTATCTGATTA
CATTGGTGTAATGACTGTTGTTCTTTTTGCTCCCGAGGATTTGCAACTCATAAAAGGGGCACCAAGTCTTCGTCGCAAAT
TTATCGATATCGACCTTGGACAAATAAAGCCAGTTTATTTATCTGATTTATCGAATTACAACCATGTCCTTAAACAGCGT
AATACCTACCTTAAAACGGCTGAAAAAGTCGATATTGACTTTCTAGCAGTACTTGATGAACAGCTAGCTGACTTTGGTAG
CCGTGTTATGGAACACCGTCTAGATTTTATTGCTAATTTAGAAAAAGAAGCTGATCGCTACCACTATACCATTTCTGATG
GCTTAGAACATTTGAAAATTCACTATTTATCATCCGTACCTTTTGATAAAAAATCTGATATCAAAGAACAATTTTTAAAG
ACTTTAGAAAAAAATCACAAACGTGATATTTTCAAAAAAAATACTGGTGCTGGTCCACACCGTGATGATTTAGAATTTTT
CATCAATGATATGCCAGCCAATTTTGGAAGTCAAGGTCAGCATCGTAGCCTAATTTTATCTCTAAAAATGGCTGAAATTG
AGCTTATCAAAAATGTTACGGGCGACTATCCGATTTTACTTCTCGACGATGTTATGAGTGAGTTAGATAATTACAGACAA
ACTGAGCTACTGAAAATGATTATCGCTAAAAATGTTCAGACTTTCATTACAACAACAAGTCTTGAACATTTATCACAACT
CCCCAAAGAATTAAAAATTTTTACTGTTACCAAAGGACATATTCAGGAGAACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

64.286

100

0.643
  recF Bacillus subtilis subsp. subtilis str. 168

45.38

100

0.459