Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD1   Type   Regulator
Locus tag   GPA00_RS02060 Genome accession   NZ_CP046629
Coordinates   409228..410553 (-) Length   441 a.a.
NCBI ID   WP_157327340.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 404228..415553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS02030 (GPA00_02030) comD/comD3 404880..405893 (-) 1014 WP_232524224.1 sensor histidine kinase Regulator
  GPA00_RS02035 (GPA00_02035) comD/comD3 406266..407639 (-) 1374 WP_157327331.1 GHKL domain-containing protein Regulator
  GPA00_RS02040 (GPA00_02040) - 408003..408296 (-) 294 WP_157327332.1 bacteriocin immunity protein -
  GPA00_RS02045 (GPA00_02045) - 408324..408629 (-) 306 WP_157327334.1 bacteriocin immunity protein -
  GPA00_RS02050 (GPA00_02050) - 408642..408791 (-) 150 WP_157327336.1 bacteriocin -
  GPA00_RS02055 (GPA00_02055) comC/comC1 409053..409205 (+) 153 WP_157327338.1 hypothetical protein Regulator
  GPA00_RS02060 (GPA00_02060) comD/comD1 409228..410553 (-) 1326 WP_157327340.1 sensor histidine kinase Regulator
  GPA00_RS02065 (GPA00_02065) comE/comE1 410558..411289 (-) 732 WP_157327342.1 response regulator transcription factor Regulator
  GPA00_RS02070 (GPA00_02070) - 412319..413611 (-) 1293 WP_157327344.1 glycosyltransferase family 2 protein -
  GPA00_RS02075 (GPA00_02075) - 413614..413913 (-) 300 WP_157327346.1 DUF3884 family protein -
  GPA00_RS02080 (GPA00_02080) - 413939..414121 (-) 183 WP_157327348.1 hypothetical protein -
  GPA00_RS02085 (GPA00_02085) - 414187..414411 (-) 225 WP_039697856.1 helix-turn-helix domain-containing protein -
  GPA00_RS02090 (GPA00_02090) - 414401..415402 (-) 1002 WP_157327350.1 thioredoxin fold domain-containing protein -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 51086.73 Da        Isoelectric Point: 5.6851

>NTDB_id=354057 GPA00_RS02060 WP_157327340.1 409228..410553(-) (comD/comD1) [Streptococcus equinus strain CNU G6]
MLDYLVHYIPQFIYYPVIMTIFANVRGEKLNLLEIITISLSFFIIDIIWCPTAIVRILILYLISYLNRRDLPRSLHIFNG
SFPWVIDSIIIRTIGFFILPIFGLDYIDVSKNNLLYVIVQFSVLLVYLLSTKLSKIDFQTFIEISEIKSLRKKLVFTDVT
MIFYYIAIECLTSAEAEFGGLIPTLIYRQWLVFLYFIFFILMMVYINRSHQGWLEKEIASAREQELKSLSIYSKKVEGLY
EELRAFRHDYANILVSLKEGIDQDDMGIVRKIYESVLEDSSDFIQSSKFNISRLANIKDDAIKSLLSAKFLEAEANHIEV
NLEVKDKIGVPDIPLLDYIRLLAILCDNAIEAALEAENPAITIACFFQDDDYVLIVDNTTKEESVPVNLIYQKDYSSKGH
GRGIGLTTIHQMMRKYSNLSVQTNSKNYHFCQTIRIKKAFD

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=354057 GPA00_RS02060 WP_157327340.1 409228..410553(-) (comD/comD1) [Streptococcus equinus strain CNU G6]
ATGTTGGATTATTTAGTTCATTATATTCCGCAGTTTATTTATTATCCTGTTATCATGACAATTTTTGCGAATGTAAGAGG
AGAAAAACTAAACTTACTGGAAATTATAACGATATCATTATCCTTTTTTATTATTGATATTATTTGGTGTCCTACTGCGA
TAGTAAGAATCTTGATACTATATTTAATATCTTATCTTAATAGAAGAGACCTGCCACGATCTTTACATATATTTAATGGT
AGTTTTCCATGGGTGATTGATAGCATTATTATTAGGACAATTGGATTTTTTATTCTCCCGATATTTGGGTTAGACTATAT
TGATGTAAGTAAAAATAATCTATTGTATGTTATTGTACAATTTTCTGTATTATTGGTTTATCTTTTGAGTACCAAACTAT
CAAAAATTGATTTTCAAACTTTTATTGAGATTAGTGAAATCAAATCTCTGCGTAAAAAGTTAGTTTTTACAGATGTGACA
ATGATTTTTTATTATATTGCGATTGAATGTTTGACATCAGCTGAAGCGGAATTTGGAGGGTTGATTCCAACATTAATCTA
CCGACAGTGGCTGGTTTTTCTATATTTTATATTTTTTATTCTTATGATGGTTTACATAAACCGTTCTCACCAAGGTTGGT
TAGAAAAAGAGATTGCTAGTGCCCGTGAGCAAGAGTTGAAATCTTTATCAATTTACAGTAAAAAGGTTGAAGGTTTATAC
GAGGAGTTGCGTGCTTTTCGTCATGATTATGCTAATATCTTGGTCAGCTTAAAAGAGGGAATTGATCAAGATGACATGGG
AATAGTCCGAAAAATCTATGAATCTGTTCTGGAGGATTCGTCAGACTTCATTCAAAGTAGTAAATTTAATATCAGTCGTC
TAGCTAATATCAAAGACGATGCCATAAAGAGTCTTTTGTCAGCTAAATTTTTAGAGGCTGAAGCCAATCATATTGAAGTA
AATTTAGAGGTTAAAGACAAGATTGGAGTACCCGATATTCCGCTACTAGATTATATTCGCTTACTTGCTATTTTATGTGA
TAATGCTATTGAAGCAGCGCTCGAGGCAGAAAATCCAGCCATCACTATTGCTTGTTTTTTTCAAGATGATGACTATGTGC
TAATTGTAGATAATACGACTAAGGAAGAAAGTGTCCCAGTTAATTTGATTTATCAAAAAGATTATTCAAGTAAGGGGCAT
GGACGAGGTATTGGACTTACAACGATTCATCAGATGATGCGAAAATATTCCAATCTTTCTGTTCAAACAAATAGTAAAAA
TTACCATTTTTGCCAAACCATACGTATTAAAAAAGCATTCGATTAA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(336-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD1 Streptococcus equinus JB1

89.224

52.608

0.469
  comD/comD3 Streptococcus equinus JB1

35.974

100

0.381