Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GPA00_RS00540 Genome accession   NZ_CP046629
Coordinates   110904..111713 (-) Length   269 a.a.
NCBI ID   WP_021142843.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 105904..116713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS00500 (GPA00_00500) - 106137..106634 (-) 498 WP_000342539.1 antirestriction protein ArdA -
  GPA00_RS00505 (GPA00_00505) - 106751..106972 (-) 222 WP_001009056.1 hypothetical protein -
  GPA00_RS00510 (GPA00_00510) mobT 107015..108220 (-) 1206 WP_000398284.1 MobT family relaxase -
  GPA00_RS00515 (GPA00_00515) - 108243..108395 (-) 153 WP_000879507.1 hypothetical protein -
  GPA00_RS00520 (GPA00_00520) - 108398..109783 (-) 1386 WP_000813488.1 FtsK/SpoIIIE domain-containing protein -
  GPA00_RS00525 (GPA00_00525) - 109812..110198 (-) 387 WP_000985015.1 YdcP family protein -
  GPA00_RS00530 (GPA00_00530) - 110214..110528 (-) 315 WP_000420682.1 YdcP family protein -
  GPA00_RS00540 (GPA00_00540) vicX 110904..111713 (-) 810 WP_021142843.1 MBL fold metallo-hydrolase Regulator
  GPA00_RS00545 (GPA00_00545) vicK 111714..113066 (-) 1353 WP_024343735.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GPA00_RS00550 (GPA00_00550) yycF 113059..113769 (-) 711 WP_021142846.1 response regulator YycF -
  GPA00_RS00555 (GPA00_00555) - 114077..114841 (+) 765 WP_024343734.1 amino acid ABC transporter ATP-binding protein -
  GPA00_RS00560 (GPA00_00560) - 114846..115655 (+) 810 WP_157327105.1 transporter substrate-binding domain-containing protein -
  GPA00_RS00565 (GPA00_00565) - 115671..116375 (+) 705 WP_039698014.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30229.07 Da        Isoelectric Point: 5.1978

>NTDB_id=354038 GPA00_RS00540 WP_021142843.1 110904..111713(-) (vicX) [Streptococcus equinus strain CNU G6]
MSENAFKYSVLASGSTGNSFYVETPQKRLLIDAGLTGKKITSLLADIDRKPEDLDAILITHEHSDHIKGVGVLARRYNLD
VYANEKTWQMIDERNMIGKLDTAQKHVFERGKVLTFGDIDIESFGVSHDAVDPQFYRLMKDNKSFVVLTDTGYVSDRMAG
VIENADGYLIESNHDVEILRAGSYPWSLKQRILSDRGHLSNEDGADTMIRTIGNRTKKIYLGHLSKENNIKELAHMTMEN
NLMQADFAVGHDMTVFDTSPDEATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=354038 GPA00_RS00540 WP_021142843.1 110904..111713(-) (vicX) [Streptococcus equinus strain CNU G6]
ATGTCTGAGAATGCTTTTAAATATAGTGTCTTAGCTTCCGGTTCTACTGGTAACTCATTTTATGTGGAAACACCACAAAA
ACGTCTTTTGATTGATGCAGGGTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGATATTGATCGAAAACCAGAAGATT
TGGATGCTATTTTAATTACACACGAACATTCCGACCATATTAAGGGTGTTGGAGTGCTTGCTCGTCGTTACAATCTTGAT
GTTTATGCCAATGAAAAAACTTGGCAAATGATTGATGAGCGCAATATGATTGGAAAACTTGACACTGCTCAGAAACATGT
TTTTGAGCGTGGTAAAGTATTGACTTTCGGTGATATTGATATTGAAAGTTTCGGAGTTAGCCACGATGCGGTTGATCCAC
AATTTTACCGTTTGATGAAAGATAACAAATCATTTGTTGTTTTGACTGATACGGGCTATGTTAGTGATAGAATGGCTGGC
GTCATTGAAAATGCAGATGGCTATTTGATTGAGTCAAATCACGATGTTGAGATATTGCGTGCGGGTTCTTATCCATGGAG
CTTAAAACAACGTATCTTATCTGATAGAGGGCATTTATCAAATGAAGATGGTGCAGATACGATGATTCGCACCATTGGTA
ATCGTACGAAAAAAATCTATCTTGGTCACTTGAGTAAGGAAAATAATATCAAAGAACTAGCTCACATGACTATGGAAAAT
AATTTGATGCAAGCTGATTTTGCGGTTGGACACGATATGACTGTCTTTGATACGTCACCGGATGAAGCAACGCCATTAAC
TGAAATCTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.208

100

0.762