Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   GO596_RS01065 Genome accession   NZ_CP046628
Coordinates   214592..215626 (-) Length   344 a.a.
NCBI ID   WP_157339069.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 209592..220626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS01040 (GO596_01040) - 210654..211721 (-) 1068 WP_157328517.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  GO596_RS01045 (GO596_01045) - 211727..212752 (-) 1026 WP_157327720.1 sensor domain-containing diguanylate cyclase -
  GO596_RS01055 (GO596_01055) trmB 213087..213725 (-) 639 WP_021141720.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GO596_RS01060 (GO596_01060) ccrZ 213725..214522 (-) 798 WP_413083587.1 cell cycle regulator CcrZ -
  GO596_RS01065 (GO596_01065) pptB 214592..215626 (-) 1035 WP_157339069.1 ABC transporter permease Regulator
  GO596_RS01070 (GO596_01070) pptA 215629..216354 (-) 726 WP_157339070.1 ABC transporter ATP-binding protein Regulator
  GO596_RS01075 (GO596_01075) - 216418..216837 (+) 420 WP_157339071.1 HIT family protein -
  GO596_RS01080 (GO596_01080) - 216834..217148 (+) 315 WP_021141714.1 hypothetical protein -
  GO596_RS01085 (GO596_01085) brpA 217220..218383 (-) 1164 WP_024344602.1 biofilm formation/cell division transcriptional regulator BrpA -
  GO596_RS01090 (GO596_01090) - 218394..218906 (-) 513 WP_074567228.1 GNAT family N-acetyltransferase -
  GO596_RS01095 (GO596_01095) tsaE 218899..219342 (-) 444 WP_024344600.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40083.61 Da        Isoelectric Point: 10.4584

>NTDB_id=353945 GO596_RS01065 WP_157339069.1 214592..215626(-) (pptB) [Streptococcus equinus strain CNU 77-23]
MKEVFQKRRRLFLGQCLKYLRYVLNDHFVLVLFFLLGFLMFQYGKLLQHFPKNVIWLEIILAFVALAMLSLGKIATYIEA
PDKLFYLPKEEEVVSLIHQARIRSFGIWTVIQTVVLILLAPIFFKLGMSLAIFIVLVIVLAILKWFVMTEKEKVFFKDGH
FSWEKAINYESKRRQGILKFFALFTTVKGISASVKRRAYLDKLLLLVKKTHAKTWSNLYLRAFLRSSDYLALTLRLSLLS
ILALLFIPNHLVAAGLALVFNYLLLFQLLSLAQHFDYQYLTRLYPISETQKKANLKAFLRFLSYLISLIELVLCFSLKAA
GLIILVTVIVTEWYLPYKIAKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=353945 GO596_RS01065 WP_157339069.1 214592..215626(-) (pptB) [Streptococcus equinus strain CNU 77-23]
ATGAAAGAAGTTTTTCAAAAACGACGTCGCCTCTTTTTAGGGCAATGTCTAAAGTATTTACGATATGTCTTAAATGACCA
TTTTGTTTTAGTGCTGTTTTTCTTGCTTGGATTTTTGATGTTTCAGTATGGAAAATTATTGCAGCATTTTCCCAAAAATG
TCATTTGGCTAGAAATTATTTTAGCTTTTGTGGCGCTTGCTATGCTTAGCCTTGGAAAAATTGCGACTTACATTGAGGCA
CCGGATAAGTTATTTTATCTTCCTAAGGAAGAAGAAGTTGTAAGCCTGATTCATCAAGCACGCATTCGTTCATTTGGTAT
TTGGACGGTGATTCAGACAGTTGTGCTGATTTTATTGGCACCGATTTTCTTCAAATTGGGAATGTCACTAGCTATTTTTA
TTGTATTGGTGATTGTTTTAGCTATTCTGAAGTGGTTTGTGATGACAGAAAAGGAAAAAGTCTTTTTTAAAGATGGACAT
TTTTCATGGGAAAAAGCTATTAATTATGAATCGAAACGTCGTCAAGGAATCCTGAAGTTCTTTGCTCTCTTTACAACTGT
TAAAGGTATTTCAGCTAGCGTAAAACGTCGTGCTTATCTTGATAAATTGTTACTTTTAGTTAAGAAGACACATGCTAAAA
CGTGGTCAAACTTGTACCTTCGAGCTTTTCTTCGCAGCTCGGATTACTTAGCATTAACTTTGCGTTTATCATTACTAAGT
ATTTTAGCTTTGCTATTTATTCCAAATCATTTAGTAGCAGCAGGTCTTGCACTTGTTTTTAACTACCTTTTACTCTTTCA
GTTATTGAGTTTAGCCCAACATTTTGATTATCAATATTTAACACGTTTATACCCAATATCAGAAACACAGAAAAAGGCTA
ATCTAAAGGCATTTTTGAGATTTTTATCTTATTTGATTAGTTTAATTGAGCTTGTTTTATGCTTCTCATTGAAAGCAGCA
GGTCTTATCATTTTAGTGACTGTAATTGTTACAGAATGGTATCTTCCTTACAAAATCGCGAAGATGATTGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.957

100

0.471

  pptB Streptococcus salivarius strain HSISS4

45.507

100

0.456