Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GO596_RS00150 Genome accession   NZ_CP046628
Coordinates   32525..33121 (-) Length   198 a.a.
NCBI ID   WP_021141898.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27525..38121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS00130 (GO596_00130) - 27835..28845 (-) 1011 WP_328598728.1 polymerase -
  GO596_RS00135 (GO596_00135) - 28995..30359 (-) 1365 WP_157339003.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  GO596_RS00140 (GO596_00140) - 30606..31163 (+) 558 WP_074566256.1 folate family ECF transporter S component -
  GO596_RS00145 (GO596_00145) - 31243..32289 (-) 1047 WP_027967937.1 D-alanine--D-alanine ligase -
  GO596_RS00150 (GO596_00150) recR 32525..33121 (-) 597 WP_021141898.1 recombination mediator RecR Machinery gene
  GO596_RS00155 (GO596_00155) pbp2b 33182..35260 (-) 2079 WP_157339004.1 penicillin-binding protein PBP2B -
  GO596_RS00160 (GO596_00160) - 35432..35980 (-) 549 WP_074450938.1 hypothetical protein -
  GO596_RS00165 (GO596_00165) - 36161..36682 (-) 522 WP_021141895.1 transcription repressor NadR -
  GO596_RS00170 (GO596_00170) - 36871..37563 (-) 693 WP_021141894.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21640.93 Da        Isoelectric Point: 4.9171

>NTDB_id=353931 GO596_RS00150 WP_021141898.1 32525..33121(-) (recR) [Streptococcus equinus strain CNU 77-23]
MLYPAPIAKLIDSFTKLPGIGIKTATRLAFYTIGMSDEDVNEFAKNLLSAKRELTYCSVCGNLTDDDPCSICTDKTRKRS
VILVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGVGPDDINLKSLITRLMDSEVSEVIIATNATADGEATAMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=353931 GO596_RS00150 WP_021141898.1 32525..33121(-) (recR) [Streptococcus equinus strain CNU 77-23]
ATGCTTTATCCAGCACCTATTGCAAAATTAATTGATAGTTTTACAAAACTACCTGGAATCGGGATTAAAACAGCAACTCG
CTTAGCTTTCTATACTATTGGAATGTCTGATGAAGATGTGAATGAATTTGCCAAAAATTTGTTATCAGCTAAGCGTGAAT
TGACTTATTGTTCTGTCTGTGGCAATCTAACTGATGACGACCCTTGCAGTATTTGTACTGATAAAACACGAAAACGTTCA
GTGATTTTGGTCGTTGAAGATTCAAAAGATGTTTCTGCCATGGAAAAAATTCAAGAATATCATGGGCTTTACCACGTTTT
ACATGGATTGATTTCACCGATGAACGGCGTTGGACCTGATGATATTAATTTGAAATCATTAATCACACGTTTGATGGACA
GCGAAGTGAGCGAAGTCATCATTGCAACTAATGCTACAGCAGACGGCGAGGCAACTGCTATGTATATTTCACGTGTCTTA
AAACCAGCAGGAATCAAGGTAACACGTTTAGCACGTGGACTGGCTGTTGGCTCAGACATCGAATACGCCGACGAAGTAAC
CCTACTTCGCGCCATTGAAAATCGAACAGAATTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

65.152

100

0.652
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475