Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GO602_RS00175 Genome accession   NZ_CP046602
Coordinates   36291..36914 (-) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 31291..41914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS00150 (GO602_00150) - 32073..32996 (-) 924 WP_024918135.1 choline ABC transporter substrate-binding protein -
  GO602_RS00155 (GO602_00155) betC 33013..34524 (-) 1512 WP_024918134.1 choline-sulfatase -
  GO602_RS00160 (GO602_00160) - 34637..35551 (+) 915 WP_024918133.1 choline sulfate utilization transcriptional regulator -
  GO602_RS00165 (GO602_00165) - 35562..35939 (+) 378 WP_024918132.1 DOPA 4,5-dioxygenase family protein -
  GO602_RS00170 (GO602_00170) - 35918..36283 (-) 366 WP_024918131.1 Hpt domain-containing protein -
  GO602_RS00175 (GO602_00175) letA 36291..36914 (-) 624 WP_003111192.1 response regulator transcription factor Regulator
  GO602_RS00180 (GO602_00180) trpA 37100..37906 (-) 807 WP_121501522.1 tryptophan synthase subunit alpha -
  GO602_RS00185 (GO602_00185) trpB 37903..39111 (-) 1209 WP_024918129.1 tryptophan synthase subunit beta -
  GO602_RS00190 (GO602_00190) trpI 39215..40102 (+) 888 WP_124181421.1 trpBA operon transcriptional activator TrpI -
  GO602_RS00195 (GO602_00195) - 40204..40419 (+) 216 WP_003097345.1 dodecin -
  GO602_RS00200 (GO602_00200) - 40603..40830 (+) 228 WP_003097347.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=353827 GO602_RS00175 WP_003111192.1 36291..36914(-) (letA) [Pseudomonas aeruginosa strain CMC-115]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=353827 GO602_RS00175 WP_003111192.1 36291..36914(-) (letA) [Pseudomonas aeruginosa strain CMC-115]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATTCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAGCGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTATATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGTTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAACTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362