Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GO005_RS08360 Genome accession   NZ_CP046592
Coordinates   1591729..1592754 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain TR21     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1586729..1597754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS08325 (GO005_08315) ylbE 1587029..1587268 (+) 240 WP_003232231.1 YlbE-like family protein -
  GO005_RS08330 (GO005_08320) ylbF 1587384..1587833 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GO005_RS08335 (GO005_08325) ylbG 1587888..1588160 (+) 273 WP_009967171.1 YlbG family protein -
  GO005_RS08340 (GO005_08330) rsmD 1588483..1589037 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GO005_RS08345 (GO005_08335) coaD 1589042..1589527 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GO005_RS08350 (GO005_08340) spoVV 1589538..1590764 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  GO005_RS08355 (GO005_08345) ylbK 1590945..1591727 (+) 783 WP_003232221.1 patatin family protein -
  GO005_RS08360 (GO005_08350) sepM 1591729..1592754 (+) 1026 WP_003245451.1 protease DdcP Regulator
  GO005_RS08365 (GO005_08355) tmcAL 1592771..1594018 (-) 1248 WP_003244707.1 nucleotidyltransferase -
  GO005_RS08370 (GO005_08360) - 1594015..1594200 (-) 186 WP_003232215.1 hypothetical protein -
  GO005_RS08375 (GO005_08365) ylbN 1594228..1594746 (+) 519 WP_003232214.1 DUF177 domain-containing protein -
  GO005_RS08380 (GO005_08370) rpmF 1594768..1594947 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  GO005_RS08385 (GO005_08375) gerR 1595093..1595674 (+) 582 WP_003232210.1 sporulation specific transcriptional regulator GerR -
  GO005_RS08390 (GO005_08380) ylbP 1595731..1596213 (-) 483 WP_003244940.1 N-acetyltransferase -
  GO005_RS08395 (GO005_08385) panEA 1596373..1597269 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=353736 GO005_RS08360 WP_003245451.1 1591729..1592754(+) (sepM) [Bacillus subtilis strain TR21]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=353736 GO005_RS08360 WP_003245451.1 1591729..1592754(+) (sepM) [Bacillus subtilis strain TR21]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402