Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   GO005_RS08330 Genome accession   NZ_CP046592
Coordinates   1587384..1587833 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain TR21     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1582384..1592833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS08290 (GO005_08280) ctaE 1582403..1583026 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  GO005_RS08295 (GO005_08285) ctaF 1583029..1583361 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  GO005_RS08300 (GO005_08290) ctaG 1583388..1584281 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  GO005_RS08305 (GO005_08295) ylbA 1584313..1584675 (-) 363 WP_003232238.1 YugN family protein -
  GO005_RS08310 (GO005_08300) ylbB 1584815..1585261 (+) 447 WP_003221362.1 CBS domain-containing protein -
  GO005_RS08315 (GO005_08305) ylbC 1585345..1586385 (+) 1041 WP_032721504.1 CAP domain-containing protein -
  GO005_RS08320 (GO005_08310) ylbD 1586615..1587013 (+) 399 WP_003232233.1 YlbD family protein -
  GO005_RS08325 (GO005_08315) ylbE 1587029..1587268 (+) 240 WP_003232231.1 YlbE-like family protein -
  GO005_RS08330 (GO005_08320) ylbF 1587384..1587833 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GO005_RS08335 (GO005_08325) ylbG 1587888..1588160 (+) 273 WP_009967171.1 YlbG family protein -
  GO005_RS08340 (GO005_08330) rsmD 1588483..1589037 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GO005_RS08345 (GO005_08335) coaD 1589042..1589527 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GO005_RS08350 (GO005_08340) spoVV 1589538..1590764 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  GO005_RS08355 (GO005_08345) ylbK 1590945..1591727 (+) 783 WP_003232221.1 patatin family protein -
  GO005_RS08360 (GO005_08350) sepM 1591729..1592754 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=353735 GO005_RS08330 WP_003221370.1 1587384..1587833(+) (ylbF) [Bacillus subtilis strain TR21]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=353735 GO005_RS08330 WP_003221370.1 1587384..1587833(+) (ylbF) [Bacillus subtilis strain TR21]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1