Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GO004_RS14400 Genome accession   NZ_CP046591
Coordinates   2744812..2745606 (+) Length   264 a.a.
NCBI ID   WP_088467475.1    Uniprot ID   -
Organism   Bacillus subtilis strain R31     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2739812..2750606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS14380 (GO004_14370) walR 2740054..2740761 (+) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -
  GO004_RS14385 (GO004_14375) walK 2740769..2742604 (+) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  GO004_RS14390 (GO004_14380) walH 2742594..2743961 (+) 1368 WP_046664054.1 WalRK two-component regulatory system regulator WalH -
  GO004_RS14395 (GO004_14385) walI 2743948..2744790 (+) 843 WP_128422530.1 WalRK two-component regulatory system regulator WalI -
  GO004_RS14400 (GO004_14390) vicX 2744812..2745606 (+) 795 WP_088467475.1 MBL fold metallo-hydrolase Regulator
  GO004_RS14405 (GO004_14395) htrA 2745688..2746890 (+) 1203 WP_015250812.1 serine protease HtrC Regulator
  GO004_RS14410 (GO004_14400) - 2746911..2747040 (+) 130 Protein_2810 hypothetical protein -
  GO004_RS14415 (GO004_14405) - 2747068..2747220 (+) 153 Protein_2811 ATP-binding protein -
  GO004_RS14420 (GO004_14410) rocR 2747202..2748587 (-) 1386 WP_003244510.1 arginine utilization regulatory protein RocR -
  GO004_RS14425 (GO004_14415) - 2748818..2749102 (+) 285 WP_015715052.1 autorepressor SdpR family transcription factor -
  GO004_RS14430 (GO004_14420) - 2749102..2749737 (+) 636 WP_041520538.1 SdpI family protein -
  GO004_RS14435 (GO004_14425) - 2749921..2750475 (+) 555 WP_015715050.1 SdpA family antimicrobial peptide system protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29279.27 Da        Isoelectric Point: 5.8036

>NTDB_id=353630 GO004_RS14400 WP_088467475.1 2744812..2745606(+) (vicX) [Bacillus subtilis strain R31]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDIGHVSNEDAALALTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=353630 GO004_RS14400 WP_088467475.1 2744812..2745606(+) (vicX) [Bacillus subtilis strain R31]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACATCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGCTGACGGATGTCATTGGTGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTACAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.053

99.242

0.527