Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GO004_RS13910 Genome accession   NZ_CP046591
Coordinates   2655868..2656464 (-) Length   198 a.a.
NCBI ID   WP_003225425.1    Uniprot ID   G4NT17
Organism   Bacillus subtilis strain R31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2650868..2661464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS13900 (GO004_13890) bofA 2655296..2655559 (-) 264 WP_015715090.1 sigma-K factor-processing regulator BofA -
  GO004_RS13905 (GO004_13895) yaaL 2655626..2655850 (-) 225 WP_003242387.1 YaaL family protein -
  GO004_RS13910 (GO004_13900) recR 2655868..2656464 (-) 597 WP_003225425.1 recombination protein RecR Machinery gene
  GO004_RS13915 (GO004_13905) ebfC 2656479..2656802 (-) 324 WP_003225427.1 YbaB/EbfC family nucleoid-associated protein -
  GO004_RS13920 (GO004_13910) dnaX 2656826..2658517 (-) 1692 WP_015715089.1 DNA polymerase III subunit gamma/tau -
  GO004_RS13930 (GO004_13920) tadA 2658994..2659479 (-) 486 WP_032723100.1 tRNA adenosine(34) deaminase TadA -
  GO004_RS13935 (GO004_13925) yaaI 2659565..2660110 (+) 546 WP_003226786.1 isochorismatase family cysteine hydrolase -
  GO004_RS13940 (GO004_13930) sleL 2660180..2661463 (+) 1284 WP_032723098.1 glycoside hydrolase family 18 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21974.53 Da        Isoelectric Point: 5.3504

>NTDB_id=353625 GO004_RS13910 WP_003225425.1 2655868..2656464(-) (recR) [Bacillus subtilis strain R31]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=353625 GO004_RS13910 WP_003225425.1 2655868..2656464(-) (recR) [Bacillus subtilis strain R31]
ATGCAATATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGATGTAGTATTAGATTTTGCGAAAGCATTAGTAAATGCGAAACGCAACC
TGACATATTGTTCAGTTTGCGGGCATATTACAGATCAGGACCCTTGCTATATATGTGAAGATACGCGCAGGGATAAGTCT
GTTATCTGTGTTGTGCAAGACCCTAAGGATGTTATCGCTATGGAGAAAATGAAGGAATACAACGGACAGTATCACGTTCT
TCACGGCGCTATTTCTCCAATGGACGGCATTGGACCGGAGGATATTAAAATACCAGAATTGTTAAAACGATTACAGGATG
ATCAAGTGACAGAAGTGATCCTCGCGACAAACCCTAATATAGAAGGGGAAGCAACGGCGATGTATATATCAAGGCTCCTC
AAGCCGTCTGGTATTAAGCTCTCCCGTATTGCCCACGGACTGCCCGTCGGCGGTGACTTGGAATATGCTGACGAGGTCAC
TCTTTCTAAAGCACTTGAAGGAAGACGTGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

100

100

1
  recR Streptococcus pneumoniae R6

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.041

98.99

0.515