Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GO004_RS06035 Genome accession   NZ_CP046591
Coordinates   1139284..1140309 (-) Length   341 a.a.
NCBI ID   WP_046664167.1    Uniprot ID   -
Organism   Bacillus subtilis strain R31     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1134284..1145309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS06000 (GO004_05970) panEA 1134769..1135665 (-) 897 WP_015252144.1 2-dehydropantoate 2-reductase -
  GO004_RS06005 (GO004_05975) ylbP 1135825..1136307 (+) 483 WP_014476736.1 N-acetyltransferase -
  GO004_RS06010 (GO004_05980) gerR 1136364..1136945 (-) 582 WP_015715842.1 sporulation specific transcriptional regulator GerR -
  GO004_RS06015 (GO004_05985) rpmF 1137091..1137270 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  GO004_RS06020 (GO004_05990) ylbN 1137292..1137810 (-) 519 WP_014479718.1 DUF177 domain-containing protein -
  GO004_RS06025 (GO004_05995) - 1137838..1138023 (+) 186 WP_003232215.1 hypothetical protein -
  GO004_RS06030 (GO004_06000) tmcAL 1138020..1139267 (+) 1248 WP_003244707.1 nucleotidyltransferase -
  GO004_RS06035 (GO004_06005) sepM 1139284..1140309 (-) 1026 WP_046664167.1 protease DdcP Regulator
  GO004_RS06040 (GO004_06010) ylbK 1140311..1141093 (-) 783 WP_021479345.1 patatin family protein -
  GO004_RS06045 (GO004_06015) spoVV 1141274..1142500 (+) 1227 WP_046664166.1 dipicolinic acid transporter SpoVV -
  GO004_RS06050 (GO004_06020) coaD 1142511..1142996 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GO004_RS06055 (GO004_06025) rsmD 1143001..1143555 (-) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GO004_RS06060 (GO004_06030) ylbG 1143878..1144150 (-) 273 WP_015715839.1 YlbG family protein -
  GO004_RS06065 (GO004_06035) ylbF 1144205..1144654 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GO004_RS06070 (GO004_06040) ylbE 1144770..1145009 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37635.23 Da        Isoelectric Point: 6.5349

>NTDB_id=353565 GO004_RS06035 WP_046664167.1 1139284..1140309(-) (sepM) [Bacillus subtilis strain R31]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDFISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=353565 GO004_RS06035 WP_046664167.1 1139284..1140309(-) (sepM) [Bacillus subtilis strain R31]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTTTATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCATCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(128-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.857

100

0.399

Multiple sequence alignment