Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   GO004_RS06065 Genome accession   NZ_CP046591
Coordinates   1144205..1144654 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain R31     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139205..1149654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS06035 (GO004_06005) sepM 1139284..1140309 (-) 1026 WP_046664167.1 protease DdcP Regulator
  GO004_RS06040 (GO004_06010) ylbK 1140311..1141093 (-) 783 WP_021479345.1 patatin family protein -
  GO004_RS06045 (GO004_06015) spoVV 1141274..1142500 (+) 1227 WP_046664166.1 dipicolinic acid transporter SpoVV -
  GO004_RS06050 (GO004_06020) coaD 1142511..1142996 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GO004_RS06055 (GO004_06025) rsmD 1143001..1143555 (-) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GO004_RS06060 (GO004_06030) ylbG 1143878..1144150 (-) 273 WP_015715839.1 YlbG family protein -
  GO004_RS06065 (GO004_06035) ylbF 1144205..1144654 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GO004_RS06070 (GO004_06040) ylbE 1144770..1145009 (-) 240 WP_003232231.1 YlbE-like family protein -
  GO004_RS06075 (GO004_06045) ylbD 1145025..1145423 (-) 399 WP_003232233.1 YlbD family protein -
  GO004_RS06080 (GO004_06050) ylbC 1145655..1146695 (-) 1041 WP_014479713.1 CAP domain-containing protein -
  GO004_RS06085 (GO004_06055) ylbB 1146779..1147225 (-) 447 WP_003221362.1 CBS domain-containing protein -
  GO004_RS06090 (GO004_06060) ylbA 1147365..1147727 (+) 363 WP_003232238.1 YugN family protein -
  GO004_RS06095 (GO004_06065) ctaG 1147759..1148652 (-) 894 WP_046664162.1 cytochrome c oxidase assembly factor CtaG -
  GO004_RS06100 (GO004_06070) ctaF 1148680..1149012 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  GO004_RS06105 (GO004_06075) ctaE 1149015..1149638 (-) 624 WP_015715836.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=353566 GO004_RS06065 WP_003221370.1 1144205..1144654(-) (ylbF) [Bacillus subtilis strain R31]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=353566 GO004_RS06065 WP_003221370.1 1144205..1144654(-) (ylbF) [Bacillus subtilis strain R31]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1