Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   E4T55_RS03080 Genome accession   NZ_CP038273
Coordinates   708194..708895 (+) Length   233 a.a.
NCBI ID   WP_223168246.1    Uniprot ID   -
Organism   Legionella israelensis strain Bercovier 4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 703194..713895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T55_RS03055 (E4T55_03055) radA 703638..704993 (-) 1356 WP_058500665.1 DNA repair protein RadA -
  E4T55_RS03060 (E4T55_03060) - 705064..705726 (-) 663 WP_058500664.1 hypothetical protein -
  E4T55_RS03065 (E4T55_03065) - 706170..706400 (+) 231 WP_058500663.1 exodeoxyribonuclease VII small subunit -
  E4T55_RS03070 (E4T55_03070) - 706393..707301 (+) 909 WP_058500662.1 polyprenyl synthetase family protein -
  E4T55_RS03075 (E4T55_03075) bioC 707286..708152 (-) 867 WP_058500685.1 malonyl-ACP O-methyltransferase BioC -
  E4T55_RS03080 (E4T55_03080) comFC 708194..708895 (+) 702 WP_223168246.1 ComF family protein Machinery gene
  E4T55_RS03085 (E4T55_03085) - 709105..710178 (-) 1074 WP_058500661.1 site-2 protease family protein -
  E4T55_RS03090 (E4T55_03090) - 710195..710479 (-) 285 WP_058500660.1 hypothetical protein -
  E4T55_RS03095 (E4T55_03095) - 710592..711572 (-) 981 WP_058500659.1 hypothetical protein -
  E4T55_RS03100 (E4T55_03100) hemA 711724..712998 (+) 1275 WP_058500658.1 glutamyl-tRNA reductase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26718.73 Da        Isoelectric Point: 9.4469

>NTDB_id=353059 E4T55_RS03080 WP_223168246.1 708194..708895(+) (comFC) [Legionella israelensis strain Bercovier 4]
MLQIFASITQRLRFPTVCLLCKQYQRDAQFICKECLCLFKSIKYGCKYCACPLPDAHFPVCGACSTKQPDFDRAIIAYPY
EEPLRTLIHQFKYQEKLYLVSFLSQLMLPFLKECDEIPQCLIPVPMHPQRLKQRGFNQAAVLTKALAKKMHIPYQLQGCQ
KIINTKPQASLDKKQRAKNLRQAFTVNTLPYQHIALVDDLLTTGNTANELARAFKKKGVLRVDVWCCARAVLA

Nucleotide


Download         Length: 702 bp        

>NTDB_id=353059 E4T55_RS03080 WP_223168246.1 708194..708895(+) (comFC) [Legionella israelensis strain Bercovier 4]
GTGCTTCAGATTTTCGCCAGTATAACACAGAGACTGCGTTTTCCTACAGTCTGTCTATTATGCAAACAATATCAACGTGA
TGCCCAATTCATCTGCAAAGAGTGTCTCTGTCTTTTTAAATCGATAAAATATGGCTGTAAATACTGCGCCTGCCCCCTTC
CAGATGCCCATTTTCCAGTGTGCGGAGCCTGCAGCACAAAGCAACCTGATTTTGACCGTGCCATTATCGCTTATCCTTAT
GAAGAACCTTTACGAACCCTTATTCATCAATTCAAATATCAGGAAAAACTCTATCTGGTCTCTTTTCTAAGCCAGTTAAT
GCTTCCTTTTCTAAAAGAATGCGATGAAATCCCTCAATGCCTTATACCGGTCCCTATGCACCCTCAGCGGCTGAAACAAA
GAGGTTTTAATCAGGCTGCCGTACTTACCAAAGCCTTGGCGAAAAAAATGCACATCCCCTATCAACTGCAAGGATGTCAA
AAAATCATCAATACTAAACCCCAGGCCAGTCTTGATAAAAAGCAGCGGGCAAAAAATCTCAGGCAGGCATTTACAGTCAA
TACCTTGCCTTATCAACACATCGCGCTTGTCGATGATCTTTTAACCACAGGAAATACGGCTAATGAATTAGCACGAGCTT
TCAAGAAAAAAGGCGTTCTGCGGGTGGACGTCTGGTGCTGTGCTCGAGCCGTATTGGCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

58.442

99.142

0.579
  comFC Legionella pneumophila strain ERS1305867

62.903

79.828

0.502

Multiple sequence alignment