Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   E4T54_RS09900 Genome accession   NZ_CP038271
Coordinates   2202936..2203595 (+) Length   219 a.a.
NCBI ID   WP_028386582.1    Uniprot ID   -
Organism   Legionella geestiana strain 1308     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2197936..2208595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T54_RS09875 (E4T54_09875) hemA 2198663..2199937 (-) 1275 WP_028386587.1 glutamyl-tRNA reductase -
  E4T54_RS09880 (E4T54_09880) - 2200093..2200383 (+) 291 WP_028386586.1 hypothetical protein -
  E4T54_RS09885 (E4T54_09885) - 2200393..2201085 (-) 693 WP_338011253.1 ComF family protein -
  E4T54_RS09890 (E4T54_09890) bioC 2201124..2201987 (+) 864 WP_028386584.1 malonyl-ACP O-methyltransferase BioC -
  E4T54_RS09895 (E4T54_09895) phhA 2202053..2202871 (+) 819 WP_028386583.1 phenylalanine 4-monooxygenase -
  E4T54_RS09900 (E4T54_09900) letA 2202936..2203595 (+) 660 WP_028386582.1 two-component system response regulator LetA Regulator
  E4T54_RS09905 (E4T54_09905) uvrC 2203595..2205472 (+) 1878 WP_028386581.1 excinuclease ABC subunit UvrC -
  E4T54_RS09910 (E4T54_09910) - 2205554..2206273 (+) 720 WP_028386580.1 L,D-transpeptidase -
  E4T54_RS09915 (E4T54_09915) - 2206339..2206812 (+) 474 WP_238582815.1 endopeptidase IV -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24586.79 Da        Isoelectric Point: 6.8605

>NTDB_id=353048 E4T54_RS09900 WP_028386582.1 2202936..2203595(+) (letA) [Legionella geestiana strain 1308]
MIKVLIVDDHALVRMGIRRLLDDLPDVEVVADAESGEQALQMVKQHQPHVVLLDMKMPGIDGWEVTRRLKKSSPQVKVIA
VTAVCAEPLPARVLQLGAMGYLTKECGAGEMAAAIRRVYQGEKYLSAEIARKMAISSLEEPRESPFSQLSEREMQVMLMI
TSGMMVQDIANRLFLSTKTINGYRYRIFEKLCVKNDVELTFLAMQHRVIERPGESDSPS

Nucleotide


Download         Length: 660 bp        

>NTDB_id=353048 E4T54_RS09900 WP_028386582.1 2202936..2203595(+) (letA) [Legionella geestiana strain 1308]
TTGATTAAAGTACTCATTGTCGATGACCATGCACTGGTTCGGATGGGTATTCGGCGTTTACTGGATGATTTGCCTGATGT
GGAAGTGGTGGCTGACGCTGAAAGCGGCGAGCAGGCCTTACAGATGGTGAAGCAGCACCAGCCGCATGTGGTATTGCTTG
ATATGAAAATGCCAGGCATTGATGGCTGGGAAGTCACACGGCGTCTTAAAAAATCGAGTCCCCAGGTGAAAGTGATAGCC
GTAACCGCCGTGTGTGCAGAGCCGCTGCCAGCGCGCGTTTTACAACTGGGCGCCATGGGGTATCTGACCAAGGAGTGCGG
TGCAGGTGAGATGGCGGCCGCCATTCGCCGGGTGTATCAGGGCGAAAAATACCTGAGCGCTGAAATTGCTCGAAAAATGG
CAATCAGCAGCCTCGAGGAGCCGCGTGAATCACCGTTCAGTCAGCTCTCCGAGCGTGAAATGCAGGTCATGCTCATGATA
ACGAGCGGCATGATGGTGCAGGATATCGCCAACCGTTTGTTTCTAAGCACAAAAACCATTAATGGATACCGTTATCGCAT
TTTTGAAAAGCTTTGCGTGAAGAACGATGTGGAGCTGACGTTTCTCGCGATGCAGCACCGTGTGATTGAGCGCCCGGGCG
AATCCGACAGTCCCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

80.841

97.717

0.79
  letA Legionella pneumophila strain ERS1305867

80.841

97.717

0.79

Multiple sequence alignment