Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SaO408_RS10970 Genome accession   NZ_CP038270
Coordinates   2138640..2139035 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O408 isolate B115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2133640..2144035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO408_RS10945 (SaO408_2027) thiE 2134265..2134906 (-) 642 WP_000483158.1 thiamine phosphate synthase -
  SaO408_RS10950 (SaO408_2028) thiM 2134911..2135699 (-) 789 WP_001108485.1 hydroxyethylthiazole kinase -
  SaO408_RS10955 (SaO408_2029) thiD 2135683..2136513 (-) 831 WP_000594955.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SaO408_RS10960 (SaO408_2030) tenA 2136506..2137168 (-) 663 WP_000396061.1 thiaminase II -
  SaO408_RS10965 (SaO408_2031) sceD 2137555..2138250 (-) 696 WP_000752002.1 lytic transglycosylase SceD -
  SaO408_RS10970 (SaO408_2032) ssb 2138640..2139035 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SaO408_RS10975 (SaO408_2033) - 2139229..2139669 (+) 441 WP_000846746.1 YwpF-like family protein -
  SaO408_RS10980 (SaO408_2034) fabZ 2139726..2140166 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SaO408_RS10985 (SaO408_2035) murA 2140200..2141465 (-) 1266 WP_120672873.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SaO408_RS10990 (SaO408_2036) - 2141576..2141809 (-) 234 WP_000384523.1 DUF1146 family protein -
  SaO408_RS10995 - 2141941..2142018 (-) 78 Protein_2038 hypothetical protein -
  SaO408_RS11005 (SaO408_2037) - 2142428..2142832 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=353023 SaO408_RS10970 WP_000932694.1 2138640..2139035(-) (ssb) [Staphylococcus aureus strain O408 isolate B115]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=353023 SaO408_RS10970 WP_000932694.1 2138640..2139035(-) (ssb) [Staphylococcus aureus strain O408 isolate B115]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment