Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SaO408_RS06325 Genome accession   NZ_CP038270
Coordinates   1250153..1251025 (+) Length   290 a.a.
NCBI ID   WP_162928166.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O408 isolate B115     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1245153..1256025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO408_RS06305 (SaO408_1177) sucC 1245270..1246436 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  SaO408_RS06310 (SaO408_1178) sucD 1246458..1247366 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  SaO408_RS06315 (SaO408_1179) - 1247592..1248710 (+) 1119 WP_043039747.1 LysM peptidoglycan-binding domain-containing protein -
  SaO408_RS06320 (SaO408_1180) fmhC 1248738..1249982 (+) 1245 WP_000672856.1 FemA/FemB family glycyltransferase FmhC -
  SaO408_RS06325 (SaO408_1181) dprA 1250153..1251025 (+) 873 WP_162928166.1 DNA-processing protein DprA Machinery gene
  SaO408_RS06330 (SaO408_1182) topA 1251199..1253274 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  SaO408_RS06335 (SaO408_1183) trmFO 1253430..1254737 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33474.85 Da        Isoelectric Point: 9.6076

>NTDB_id=352998 SaO408_RS06325 WP_162928166.1 1250153..1251025(+) (dprA) [Staphylococcus aureus strain O408 isolate B115]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGGLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPLTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=352998 SaO408_RS06325 WP_162928166.1 1250153..1251025(+) (dprA) [Staphylococcus aureus strain O408 isolate B115]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGACATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACGAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCGCCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGGTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTCTGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979

Multiple sequence alignment