Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SaO408_RS03000 Genome accession   NZ_CP038270
Coordinates   594341..594910 (+) Length   189 a.a.
NCBI ID   WP_120672830.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O408 isolate B115     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 589341..599910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO408_RS02975 (SaO408_0554) cysE 590554..591201 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SaO408_RS02980 (SaO408_0555) cysS 591185..592585 (+) 1401 WP_000631971.1 cysteine--tRNA ligase -
  SaO408_RS02985 (SaO408_0556) - 592578..592982 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SaO408_RS02990 (SaO408_0557) rlmB 592990..593736 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SaO408_RS02995 (SaO408_0558) - 593736..594260 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SaO408_RS03000 (SaO408_0559) sigH 594341..594910 (+) 570 WP_120672830.1 RNA polymerase sigma factor Regulator
  SaO408_RS03005 rpmG 595025..595168 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SaO408_RS03010 (SaO408_0560) secE 595224..595406 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SaO408_RS03015 (SaO408_0561) nusG 595419..595967 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SaO408_RS03020 (SaO408_0562) rplK 596148..596570 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SaO408_RS03025 (SaO408_0563) rplA 596778..597470 (+) 693 WP_001074613.1 50S ribosomal protein L1 -
  SaO408_RS03035 (SaO408_0564) rplJ 597742..598242 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SaO408_RS03040 (SaO408_0565) rplL 598286..598654 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SaO408_RS03045 (SaO408_0566) - 598829..599437 (+) 609 WP_000020300.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23090.96 Da        Isoelectric Point: 9.5219

>NTDB_id=352992 SaO408_RS03000 WP_120672830.1 594341..594910(+) (sigH) [Staphylococcus aureus strain O408 isolate B115]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKIFGFNHYDLEDLYQEILIWMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMNLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=352992 SaO408_RS03000 WP_120672830.1 594341..594910(+) (sigH) [Staphylococcus aureus strain O408 isolate B115]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGACAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAATATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATATGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGAATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968

Multiple sequence alignment