Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SaO331_RS10280 Genome accession   NZ_CP038269
Coordinates   2029792..2030187 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O331 isolate B114     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2024792..2035187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO331_RS10255 (SaO331_1873) thiE 2025390..2026031 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  SaO331_RS10260 (SaO331_1874) thiM 2026033..2026824 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  SaO331_RS10265 (SaO331_1875) thiD 2026808..2027638 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SaO331_RS10270 (SaO331_1876) tenA 2027631..2028320 (-) 690 WP_000396067.1 thiaminase II -
  SaO331_RS10275 (SaO331_1877) sceD 2028708..2029403 (-) 696 WP_000751997.1 lytic transglycosylase SceD -
  SaO331_RS10280 (SaO331_1878) ssb 2029792..2030187 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SaO331_RS10285 - 2030330..2030440 (-) 111 Protein_1900 ATP-binding protein -
  SaO331_RS10295 (SaO331_1879) - 2030908..2031348 (+) 441 WP_000846746.1 YwpF-like family protein -
  SaO331_RS10300 (SaO331_1880) fabZ 2031405..2031845 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SaO331_RS10305 (SaO331_1881) murA 2031879..2033144 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SaO331_RS10310 (SaO331_1882) - 2033255..2033488 (-) 234 WP_000384520.1 DUF1146 family protein -
  SaO331_RS10315 - 2033620..2033697 (-) 78 Protein_1905 hypothetical protein -
  SaO331_RS10330 (SaO331_1883) - 2034422..2034826 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=352982 SaO331_RS10280 WP_000932694.1 2029792..2030187(-) (ssb) [Staphylococcus aureus strain O331 isolate B114]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=352982 SaO331_RS10280 WP_000932694.1 2029792..2030187(-) (ssb) [Staphylococcus aureus strain O331 isolate B114]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment