Detailed information NTG0352974

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GOM46_RS08250
• Genome accession: NZ_CP046525
• Coordinates: 1693160..1694251 (+)
• Length: 363 a.a.
• NCBI ID: WP_235083581.1
• Uniprot ID: -
• Organism: Streptococcus infantis strain SO
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1688160..1699251

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOM46_RS08225 (GOM46_08170)	pgsA	1688683..1689222 (-)	540	WP_006150908.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
GOM46_RS08230 (GOM46_08175)	rodZ	1689234..1690061 (-)	828	WP_235083578.1	cytoskeleton protein RodZ	-
GOM46_RS08235 (GOM46_08180)	yfmH	1690102..1691382 (-)	1281	WP_006150900.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
GOM46_RS08240 (GOM46_08185)	yfmF	1691379..1692629 (-)	1251	WP_235083579.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
GOM46_RS08245 (GOM46_08190)	yaaA	1692789..1693157 (+)	369	WP_235083580.1	S4 domain-containing protein YaaA	-
GOM46_RS08250 (GOM46_08195)	recF	1693160..1694251 (+)	1092	WP_235083581.1	DNA replication/repair protein RecF	Machinery gene
GOM46_RS08255 (GOM46_08200)	guaB	1694307..1695785 (-)	1479	WP_016466527.1	IMP dehydrogenase	-
GOM46_RS08260 (GOM46_08205)	trpS	1695948..1696973 (-)	1026	WP_235083582.1	tryptophan--tRNA ligase	-
GOM46_RS08265 (GOM46_08210)	-	1697179..1698801 (+)	1623	WP_235083583.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 363 a.a.
• Molecular weight: 41842.06 Da
• Isoelectric Point: 7.5990

>NTDB_id=352974 GOM46_RS08250 WP_235083581.1 1693160..1694251(+) (recF) [Streptococcus infantis strain SO]
MWLKNLCIKQFRNYRNTEIDFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNLIQFEEEQLQVSGILQKKTAT
IPLEIDLTQKGRITKVNHLKQARLSDYIGHMNVVLFAPEDLQLVKGAPAIRRKFIDMELGQIKPIYLSDLSSYNHILKQR
NSYLKSTQNIDDTFLSVLDDQLVEYGCRVMIHRDDFIQKMEFFGKKKHFDISDQLEELSIHYQPSVNFVDKELLADSFRI
ALQKSRSRDLFKKNTGVGPHRDDMTFLINGIDASFGSQGQHRSLVLSIKLAEIELMESITKESPILLLDDVMSELDNTRQ
LKLLETISHNIQTFITTTSLDHLQNLPDTLSVFTVNNGQIVVN

Nucleotide

• Length: 1092 bp

>NTDB_id=352974 GOM46_RS08250 WP_235083581.1 1693160..1694251(+) (recF) [Streptococcus infantis strain SO]
ATGTGGCTGAAAAACTTATGCATTAAACAATTTCGTAACTATCGTAATACAGAAATTGATTTTAACCCAAAATTAAACGT
ATTTGTTGGCCGGAATGCTCAAGGAAAAACAAATCTTCTTGAAAGTATTTATTTTTTAGCTCTAACAAGAAGTCACAGAA
CAAAGACCGACAAAAATTTAATTCAATTTGAAGAAGAGCAACTACAAGTCTCTGGAATCTTGCAGAAAAAAACGGCAACT
ATACCACTTGAAATAGACCTCACACAAAAAGGTCGAATTACAAAAGTAAACCATTTAAAGCAAGCTCGTCTTTCTGATTA
TATCGGACATATGAACGTTGTCTTATTTGCTCCAGAAGATTTACAACTTGTCAAAGGTGCTCCGGCCATTCGTCGTAAAT
TCATTGACATGGAGTTAGGCCAAATCAAACCAATTTACTTGTCAGACCTGTCAAGTTATAACCACATCCTTAAACAGAGA
AATAGCTATCTAAAATCTACACAAAATATTGATGACACTTTTTTATCTGTCCTTGATGACCAACTTGTAGAGTACGGATG
TCGTGTAATGATTCATAGGGATGACTTCATACAAAAAATGGAATTCTTTGGCAAGAAAAAACATTTTGACATCTCAGATC
AGTTAGAAGAACTGTCAATCCACTATCAACCTTCTGTAAACTTCGTTGACAAAGAACTTTTAGCTGATTCTTTCCGTATA
GCACTTCAAAAAAGTAGATCCAGAGATTTATTTAAGAAGAATACGGGAGTTGGCCCTCATCGGGATGATATGACTTTCTT
AATCAATGGAATAGACGCAAGTTTTGGTAGTCAAGGACAGCATCGTAGTCTAGTTCTTTCTATAAAACTTGCTGAAATCG
AATTGATGGAGAGCATTACTAAAGAATCTCCAATTCTTTTACTTGATGATGTTATGAGTGAGCTTGACAATACCCGTCAA
CTTAAATTGTTAGAAACGATTTCTCATAACATCCAAACCTTTATTACAACTACTAGTTTAGACCATCTTCAAAACTTACC
TGATACTCTCAGTGTATTTACAGTAAACAACGGTCAAATAGTTGTAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	81.267	100	0.813
recF	Bacillus subtilis subsp. subtilis str. 168	45.553	100	0.466