Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GOM46_RS07085 Genome accession   NZ_CP046525
Coordinates   1437338..1437934 (-) Length   198 a.a.
NCBI ID   WP_235083429.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1432338..1442934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS07060 (GOM46_07015) rplM 1432668..1433114 (-) 447 WP_001044622.1 50S ribosomal protein L13 -
  GOM46_RS07065 (GOM46_07020) - 1433274..1433981 (-) 708 WP_235083425.1 TIGR02206 family membrane protein -
  GOM46_RS07070 (GOM46_07025) - 1434104..1434715 (-) 612 WP_235083426.1 NUDIX hydrolase -
  GOM46_RS07075 (GOM46_07030) - 1434702..1436075 (-) 1374 WP_235083427.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  GOM46_RS07080 (GOM46_07035) - 1436129..1437172 (-) 1044 WP_235083428.1 D-alanine--D-alanine ligase -
  GOM46_RS07085 (GOM46_07040) recR 1437338..1437934 (-) 597 WP_235083429.1 recombination mediator RecR Machinery gene
  GOM46_RS07090 (GOM46_07045) pbp2b 1437945..1439987 (-) 2043 WP_235083430.1 penicillin-binding protein PBP2B -
  GOM46_RS07095 (GOM46_07050) - 1440181..1441032 (+) 852 WP_006150866.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21716.87 Da        Isoelectric Point: 4.4995

>NTDB_id=352962 GOM46_RS07085 WP_235083429.1 1437338..1437934(-) (recR) [Streptococcus infantis strain SO]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELTYCTICGRLTDEDPCSICTDPSRDQS
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYISRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=352962 GOM46_RS07085 WP_235083429.1 1437338..1437934(-) (recR) [Streptococcus infantis strain SO]
ATGCTTTATCCAACACCTATTGCTAAGTTGATTGACAGTTATTCCAAACTTCCTGGTATTGGGATTAAGACAGCGACCCG
ACTGGCCTTTTATACCATTGGAATGTCGGATGACGATGTCAATGAATTTGCAAAAAATCTCCTTGCGGCCAAGCGAGAAT
TGACCTATTGCACTATTTGTGGACGTTTAACAGACGAGGACCCTTGCTCTATCTGTACAGACCCTAGTCGTGACCAATCC
ACGATTCTGGTTCTGGAAGATAGTCGCGATGTCGCTGCCATGGAAAATATTCAAGAATACCACGGTCTTTACCATGTCTT
ACACGGCTTAATTTCACCTATGAATGGGATTAGCCCAGATGACATCAATCTCAAGAGTCTCATGACACGTCTCATGGATA
GCGAAGTTTCTGAGGTCATCGTAGCGACCAATGCGACTGCTGATGGTGAGGCGACTTCCATGTATATCTCACGACTTCTC
AAACCCGCAGGAATCAAGGTTACTCGTCTAGCACGAGGTCTAGCAGTCGGAGCTGATATCGAATATGCAGATGAAGTGAC
GCTCTTAAGAGCCATCGAAAATCGTACAGAACTCTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

96.465

100

0.965
  recR Bacillus subtilis subsp. subtilis str. 168

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485