Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GOM46_RS06025 Genome accession   NZ_CP046525
Coordinates   1199692..1200369 (-) Length   225 a.a.
NCBI ID   WP_006149950.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194692..1205369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS08425 - 1194997..1195124 (+) 128 Protein_1169 AAA family ATPase -
  GOM46_RS06010 (GOM46_05995) thrS 1195198..1197141 (+) 1944 WP_006149904.1 threonine--tRNA ligase -
  GOM46_RS06015 (GOM46_06000) - 1197354..1198415 (-) 1062 WP_006149869.1 DUF389 domain-containing protein -
  GOM46_RS06020 (GOM46_06005) - 1198725..1199699 (-) 975 WP_006149936.1 sensor histidine kinase -
  GOM46_RS06025 (GOM46_06010) braR 1199692..1200369 (-) 678 WP_006149950.1 response regulator transcription factor Regulator
  GOM46_RS06030 (GOM46_06015) - 1200465..1201541 (+) 1077 WP_235084143.1 DUF2974 domain-containing protein -
  GOM46_RS06035 (GOM46_06020) - 1201652..1202281 (+) 630 WP_006149902.1 MBL fold metallo-hydrolase -
  GOM46_RS06040 (GOM46_06025) - 1202320..1204212 (-) 1893 WP_006149933.1 M13 family metallopeptidase -
  GOM46_RS06045 (GOM46_06030) - 1204391..1205113 (+) 723 WP_006149882.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25833.04 Da        Isoelectric Point: 4.9898

>NTDB_id=352953 GOM46_RS06025 WP_006149950.1 1199692..1200369(-) (braR) [Streptococcus infantis strain SO]
MHKILLVEDDPVIRQQVGKMLSEWGFEVVMVEDFMEVLTLFVQSEPHLVLMDIGLPLFNGYHWCQEIRKISKVPIMFLSS
RDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDESLLEYAGVILNTKSMDLHVEGQAITLTKNEFQIL
RVLFEHAGNIVARDDLMRELWNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=352953 GOM46_RS06025 WP_006149950.1 1199692..1200369(-) (braR) [Streptococcus infantis strain SO]
ATGCATAAGATTTTACTAGTAGAAGATGATCCAGTAATCCGTCAGCAAGTTGGGAAAATGCTCTCCGAATGGGGTTTTGA
AGTAGTCATGGTAGAAGACTTTATGGAAGTTCTAACGCTATTTGTTCAGTCTGAGCCACATCTGGTTCTTATGGATATTG
GTCTTCCCTTGTTTAATGGCTATCATTGGTGCCAGGAAATTCGCAAGATTTCAAAAGTTCCTATTATGTTTCTGTCTTCC
AGAGACCAGGCTATGGATATCGTGATGGCTATCAATATGGGAGCAGATGATTTTGTGACCAAACCTTTTGATCAACAGGT
CCTTTTAGCCAAGGTACAGGGATTATTGCGTCGCTCTTATGAGTTTGGGCGGGATGAAAGTCTCTTGGAGTATGCAGGAG
TGATCCTCAATACCAAGTCTATGGATTTGCATGTTGAGGGACAAGCAATCACGCTGACAAAGAATGAATTTCAAATCTTA
CGTGTTCTTTTTGAACACGCAGGAAATATCGTGGCGCGTGATGATCTGATGCGAGAACTCTGGAATAGTGACTTTTTCAT
CGACGATAATACTCTTTCTGTCAATGTTGCGCGATTGCGTAAAAAACTGGAAGAGCAAGGTTTGGTAGGATTTATTGAGA
CCAAGAAAGGTATCGGATACGGGTTGAAACATGCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.889

0.467
  vicR Streptococcus mutans UA159

34.894

100

0.364