Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   GOM46_RS04415 Genome accession   NZ_CP046525
Coordinates   886696..889947 (-) Length   1083 a.a.
NCBI ID   WP_006150682.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 881696..894947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS04405 (GOM46_04395) - 882464..882961 (-) 498 WP_006150658.1 YkgJ family cysteine cluster protein -
  GOM46_RS04410 (GOM46_04400) rexA 883049..886699 (-) 3651 WP_235083283.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GOM46_RS04415 (GOM46_04405) rexB 886696..889947 (-) 3252 WP_006150682.1 ATP-dependent nuclease subunit B Machinery gene
  GOM46_RS04420 (GOM46_04410) - 890078..890749 (-) 672 WP_006150664.1 CPBP family intramembrane glutamic endopeptidase -
  GOM46_RS04425 (GOM46_04415) - 890932..891741 (+) 810 WP_006150716.1 Cof-type HAD-IIB family hydrolase -
  GOM46_RS04430 (GOM46_04420) - 891789..892049 (-) 261 WP_006150712.1 SemiSWEET family transporter -
  GOM46_RS04435 (GOM46_04425) pcrA 892218..894506 (-) 2289 WP_006150704.1 DNA helicase PcrA -

Sequence

Protein


Download         Length: 1083 a.a.        Molecular weight: 124437.73 Da        Isoelectric Point: 5.1181

>NTDB_id=352938 GOM46_RS04415 WP_006150682.1 886696..889947(-) (rexB) [Streptococcus infantis strain SO]
MKLLYTDTRTSLTEILTKEAQGLVDQGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDIPAKSS
LDDIGLGMAFYKCLSEIDAKDLRVYGAIKQDPQFIQQLIEIYHEMTTAKMSFLDLESLSDADKRSDLLLIFEKVTAYLNQ
GQISQGSQLSYLINAIEENKVSSDFSQIALVIDGFTRFSSEEEHLVDLLHRKGVEIIIGVYATKKAYTSPFTEGNLYQAS
VEFLHHLAFKYQTKAENACQDHEKLDAFAKASRLLESAYDYSEINLDVNDEDRKDLQIWSCLTQKEELELVARSIRQKLH
QDSELSYKNFRILLGDVESYKLSLQTIFNQYQIPFYLGKSESMAHHPLTQFVESIGRLKRYNFRQEDLINLLRTNLYTDL
SQEEIDSFEQYLRYLGIDGLSNFKQEFTKSHHGKFDLEKLNELRLRIITPLENLLGSRKQKAENLLAKWNNFLKEAHLTK
QLQVLTETLEVSEQERQEEVWKAFCHVMEQFATVFEGSQVTLDDFLALLHSGMSLSNYRTIPATVDTVLVQSYDLISPLT
SDYIYALGLSQNNLPKITQNNSLLSDEERETLNQVTLEGSQLMIASQENLKKNRYTMLSLVNSARKQLVLSAPSLFNEDE
SEESIYLKELQNLGFSKIEKKIDRKNLSKDDIGSYHSLLSSLIAYHQQSESTSSDEDLTFIKVLARVMGKKLEDQGLENP
VLPTSPKSKTLASETLEALYPKDQDFYLSTSGLTEFYRNEYSYYIRYVLGLQEELRLKPDARSHGNFLHRIFERAMKLPA
DTSFDRRLEQAISETSQEREFQAIYQESLESQFAKEVLLDVARATGHILCHNADVETIQEEAVFGGKEQAFVQLDNGRNV
YVRGKVDRIDRLKTSDAIGVVDYKSSLTQFNFPLFFNGLNSQLPTYLAALKKEGNKDFFGAMYLEMSEPTQSLQTVKTLS
KAVTETNKSMKYQGLFLEKEMQHLGEFYNKNKTYQLSDEEFQLLLDYNALIYKKAAEKILSGQFAINPYTENGRSIAPYV
QQYQSITGFEANYHLGQARLLDKVAKSNDKEAWFNKIREELER

Nucleotide


Download         Length: 3252 bp        

>NTDB_id=352938 GOM46_RS04415 WP_006150682.1 886696..889947(-) (rexB) [Streptococcus infantis strain SO]
ATGAAACTACTTTATACCGATACTCGGACTTCTTTAACAGAAATCCTAACCAAGGAGGCTCAAGGACTAGTTGACCAAGG
CAAACGAGTCTTTTATATTGCCCCTAACTCTCTTTCTTTTGAAAAGGAACGTGCCGTGCTGGAGTGCTTGAGTCAGCAGG
CTTCTTTTGCGATTACAGTCACGCGCTTCGCACAAATGGCTCGTTATTTGGTTTTAAACGATATACCCGCGAAGTCAAGT
CTCGATGATATTGGTCTGGGTATGGCTTTTTATAAATGTTTGTCTGAGATAGACGCTAAGGATTTGCGTGTTTACGGGGC
TATTAAGCAAGATCCTCAATTCATCCAACAACTGATTGAGATTTACCATGAAATGACAACTGCAAAGATGAGCTTTTTGG
ATTTAGAAAGTCTATCTGACGCTGATAAACGTTCTGATTTACTCTTGATTTTTGAAAAGGTAACAGCATATCTCAACCAA
GGACAAATTTCACAAGGGAGTCAATTATCATATCTAATCAATGCTATCGAAGAAAACAAAGTAAGTAGTGATTTTAGTCA
GATTGCCCTAGTTATTGATGGTTTTACTCGTTTCTCTTCAGAAGAAGAACACCTAGTGGATCTGCTACACCGTAAGGGTG
TTGAGATTATTATTGGTGTGTATGCGACTAAAAAAGCTTATACAAGTCCATTTACTGAAGGGAATCTTTATCAAGCCAGT
GTTGAGTTTTTGCATCATTTAGCCTTTAAATATCAGACCAAGGCAGAAAATGCTTGTCAAGACCATGAGAAACTTGATGC
CTTTGCTAAAGCCTCAAGGCTTCTCGAAAGTGCTTATGATTATTCCGAAATTAATTTAGACGTGAATGACGAAGATAGAA
AGGACTTGCAAATCTGGTCTTGTCTAACACAAAAAGAAGAGTTGGAGTTAGTAGCTCGTAGTATTCGCCAAAAATTGCAC
CAAGACTCAGAACTGAGCTATAAGAATTTTCGAATCCTGCTAGGTGATGTAGAGTCTTATAAACTGTCTTTGCAGACAAT
ATTTAATCAGTATCAGATTCCATTTTATCTGGGCAAGAGTGAGTCCATGGCTCATCATCCTTTAACGCAATTTGTAGAAT
CCATCGGACGTTTGAAACGATACAATTTCCGTCAGGAAGATTTGATTAATCTCCTACGAACTAACTTGTATACGGACCTT
AGTCAAGAGGAAATTGATAGCTTTGAACAATATCTCCGCTATCTGGGGATTGATGGTCTTTCTAATTTTAAACAAGAGTT
TACAAAGTCACATCACGGAAAGTTTGATCTAGAAAAATTAAATGAACTTCGACTTCGTATCATTACACCTTTAGAAAATT
TACTAGGAAGTCGCAAGCAAAAGGCTGAAAATCTTCTTGCTAAATGGAACAACTTTTTGAAGGAAGCTCATTTGACCAAG
CAGTTACAAGTCTTAACAGAAACATTGGAGGTATCTGAACAAGAAAGACAAGAAGAAGTCTGGAAGGCTTTTTGCCATGT
CATGGAGCAATTTGCAACCGTGTTTGAAGGTTCTCAGGTCACTTTAGATGATTTCTTGGCACTTCTTCATTCGGGTATGT
CTTTGTCCAATTACCGTACAATTCCAGCAACAGTAGATACTGTTCTGGTGCAGAGTTATGATTTAATTTCACCGTTGACA
TCCGATTATATCTATGCGCTTGGTTTAAGTCAGAACAACTTGCCAAAAATCACTCAAAATAATAGTTTGTTGAGCGATGA
AGAAAGAGAAACCTTGAATCAAGTGACTCTAGAAGGTTCACAATTGATGATTGCTAGCCAGGAAAATCTTAAAAAGAATC
GTTATACTATGCTTTCTCTGGTTAACTCTGCTCGTAAACAGTTAGTTTTGTCAGCTCCAAGTTTATTCAATGAAGACGAG
AGTGAAGAGTCAATTTATTTGAAGGAATTGCAGAACTTAGGATTTAGCAAAATCGAAAAGAAAATCGACAGAAAAAATCT
ATCGAAAGATGATATCGGTTCTTATCACAGTCTTTTGTCTAGTCTCATTGCCTATCATCAACAAAGTGAATCAACTTCAA
GTGATGAAGACTTAACTTTTATAAAAGTTCTGGCTCGTGTCATGGGGAAAAAGTTGGAAGACCAAGGTTTAGAAAATCCA
GTTTTACCAACAAGTCCCAAAAGCAAAACTTTAGCTAGTGAAACGCTGGAAGCTTTATATCCAAAGGATCAAGATTTTTA
TCTATCCACTTCTGGATTGACGGAGTTTTATCGCAATGAATACAGTTATTACATTCGTTATGTCTTAGGCTTGCAGGAAG
AATTGCGATTAAAACCTGACGCTAGAAGTCACGGGAATTTCTTGCATCGTATTTTTGAACGTGCAATGAAACTTCCTGCT
GATACATCTTTTGATCGCCGTTTAGAACAAGCCATCTCTGAAACTAGTCAAGAAAGAGAGTTTCAAGCTATTTATCAAGA
AAGTTTAGAATCTCAATTTGCTAAGGAAGTTCTCTTAGATGTGGCACGCGCTACTGGACATATTCTTTGTCACAATGCTG
ATGTCGAAACAATTCAAGAGGAGGCTGTTTTTGGTGGCAAGGAACAAGCTTTTGTACAGTTAGATAATGGTCGTAATGTT
TATGTTCGTGGGAAGGTCGATCGTATTGACCGTTTGAAAACATCAGATGCTATTGGTGTTGTAGACTACAAATCTTCTCT
AACTCAATTTAACTTTCCTCTCTTTTTTAACGGTCTAAACTCACAATTGCCAACATACTTGGCTGCCCTTAAGAAAGAAG
GAAATAAAGACTTCTTTGGAGCTATGTACTTAGAAATGTCTGAACCAACTCAGTCATTACAAACTGTTAAAACTCTTTCA
AAGGCAGTAACTGAAACCAATAAGAGCATGAAATACCAAGGTCTCTTTCTCGAAAAAGAGATGCAACACCTTGGAGAGTT
TTACAATAAAAACAAGACATATCAGTTATCTGATGAAGAATTCCAATTATTACTAGACTATAATGCCCTTATCTACAAAA
AGGCAGCAGAGAAGATTTTATCTGGTCAATTTGCTATCAATCCATATACTGAAAACGGTAGAAGCATTGCGCCCTATGTT
CAGCAATATCAGTCTATTACAGGTTTTGAAGCTAATTATCATCTAGGTCAGGCTAGATTGTTAGACAAGGTAGCTAAGAG
CAATGACAAGGAAGCATGGTTTAATAAAATCAGAGAGGAGTTGGAGCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

78.002

100

0.786

Multiple sequence alignment