Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GOM46_RS02360 Genome accession   NZ_CP046525
Coordinates   465319..467100 (+) Length   593 a.a.
NCBI ID   WP_235083884.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 460319..472100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS02340 (GOM46_02325) - 460376..461149 (-) 774 WP_235083881.1 aminoglycoside 3'-phosphotransferase -
  GOM46_RS02345 (GOM46_02330) rlmD 461205..462572 (+) 1368 WP_235083882.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  GOM46_RS02350 (GOM46_02335) tpiA 462690..463448 (+) 759 WP_006150433.1 triose-phosphate isomerase -
  GOM46_RS02355 (GOM46_02340) - 463572..465308 (+) 1737 WP_235083883.1 ABC transporter ATP-binding protein -
  GOM46_RS02360 (GOM46_02345) rcrQ 465319..467100 (+) 1782 WP_235083884.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS02365 (GOM46_02350) - 467247..467765 (+) 519 WP_235083885.1 Dps family protein -
  GOM46_RS02370 (GOM46_02355) - 467893..468399 (+) 507 WP_235083886.1 dihydrofolate reductase -
  GOM46_RS02375 (GOM46_02360) - 468399..468569 (+) 171 WP_000442253.1 hypothetical protein -
  GOM46_RS02380 (GOM46_02365) clpX 468601..469833 (+) 1233 WP_006145154.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GOM46_RS02385 (GOM46_02370) yihA 469842..470429 (+) 588 WP_006150399.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  GOM46_RS02390 (GOM46_02375) - 470439..470819 (+) 381 WP_001140424.1 RidA family protein -
  GOM46_RS02395 (GOM46_02380) rapZ 470871..471761 (+) 891 WP_235083887.1 RNase adapter RapZ -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 66505.03 Da        Isoelectric Point: 5.8240

>NTDB_id=352916 GOM46_RS02360 WP_235083884.1 465319..467100(+) (rcrQ) [Streptococcus infantis strain SO]
MKQQSSLARLWSYLKAYRFSVFFAVFLKIVSVIMSVIEPFVLGLAITELTSNLLAMANGVAGAGINTPYIAMILVIYLLR
GLLYELGSYYSNYFMTNAVQSMIQDLRNEMSVKINRIPVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQIVNAVFTIL
FVMGMVLYLNLQLAIVVILSIPVTYFGAKTILNRSQPYFKQQAAILGQMNGFVQESLTGFNVLKLFGREEKSQERFEKIT
DELQQVGFKASFISGLMMPALHIVSDLTYLIVAVLGGLQVIAGRLTIGNMQAFVQYVWQVSQPIQNITQLAGQMQSAKSS
LDRVFEVLDEQEEVQTAKVKELPPLTGQVSFKNVDFQYVENKPLIRNFNLDVEPGEMVAIVGPTGAGKTTLINLLMRFYD
VTAGAILVDGQDIRDLSRQDYRRQFGMVLQDAWLYEGSIKENLRFGNLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLAAKGFYYDLYQSQFSNKNSENN

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=352916 GOM46_RS02360 WP_235083884.1 465319..467100(+) (rcrQ) [Streptococcus infantis strain SO]
ATGAAACAACAATCTAGTCTAGCTCGTCTATGGAGCTATTTAAAAGCCTACCGATTCTCTGTTTTCTTTGCAGTCTTCTT
AAAAATAGTCAGCGTTATTATGAGTGTCATCGAGCCTTTCGTATTAGGGCTTGCTATCACTGAGTTAACCAGCAACCTAC
TTGCCATGGCAAATGGTGTTGCAGGAGCAGGTATTAATACCCCTTATATCGCAATGATTCTGGTTATCTATCTCTTGCGT
GGTCTTCTCTATGAGTTGGGGTCATATTATTCAAACTACTTTATGACCAATGCGGTGCAGTCCATGATACAGGATTTGCG
AAATGAAATGAGCGTAAAAATCAATCGCATCCCTGTGTCCTACTTTGACAAGCACCAGTTTGGAGATTTGTTAGGTCGTT
TTACCAGTGATGTTGAAACTGTTTCAAACGCTCTACAACAATCTTTCTTACAGATCGTCAATGCAGTCTTTACCATTCTT
TTTGTTATGGGAATGGTCCTCTATCTAAATCTTCAGTTGGCCATTGTTGTCATCTTGTCGATTCCAGTGACTTACTTTGG
GGCTAAAACCATTCTAAATCGCTCCCAACCATACTTTAAACAGCAAGCAGCTATTCTGGGACAAATGAATGGTTTTGTAC
AGGAAAGCTTGACTGGTTTCAATGTTCTTAAACTTTTCGGACGTGAAGAGAAATCTCAAGAGAGATTTGAAAAGATTACG
GATGAATTGCAACAGGTTGGATTCAAGGCAAGTTTTATTTCAGGTTTGATGATGCCTGCCCTTCATATCGTGTCTGATTT
AACTTACTTAATTGTTGCAGTATTAGGTGGTTTGCAGGTTATTGCAGGACGCTTAACGATTGGTAATATGCAAGCTTTTG
TTCAGTATGTGTGGCAGGTCAGTCAACCGATCCAAAATATTACTCAATTAGCGGGACAAATGCAAAGTGCTAAATCTTCG
CTTGACCGTGTCTTTGAAGTTTTGGATGAACAGGAAGAAGTTCAAACTGCTAAAGTAAAAGAACTGCCACCATTAACAGG
ACAGGTTAGCTTCAAGAATGTTGATTTCCAATACGTGGAAAATAAACCATTGATTCGCAATTTCAACCTAGATGTTGAAC
CTGGAGAGATGGTAGCCATCGTAGGGCCAACTGGAGCCGGTAAAACTACCTTAATCAACCTGCTCATGCGTTTTTATGAT
GTAACAGCGGGTGCTATTTTAGTCGATGGTCAAGATATTCGAGACTTGTCTCGTCAGGACTACCGTCGTCAGTTTGGTAT
GGTCTTACAGGATGCCTGGCTCTATGAAGGCAGTATCAAGGAAAATCTTCGCTTTGGAAATCTTGATGCAACGGATGAGG
AAATCGTTGAAGCTGCTAAGGCTGCCAATGTAGACCACTTTATCCGTACTCTTCCTGGTGGTTACAACATGGAGATGAAC
CAAGAGTCAAGTAATATTTCTCTTGGTCAGAAGCAGTTGTTAACTATCGCGCGTGCTCTCTTAGCAGATCCAAAAATTCT
AATCCTTGACGAAGCGACCTCATCAGTCGATACGCGTCTAGAACTCTTGATTCAAAAAGCTATGAAGCGTTTGATGAAGG
GAAGAACAAGCTTTGTCATTGCTCACCGTCTTTCGACAATTCAGGAAGCTGATAAGATTTTGGTACTTAAAGATGGACAG
ATAATTGAACAGGGAAATCATGAAAGTCTTTTGGCTGCAAAAGGTTTCTATTATGATCTTTATCAAAGTCAATTCTCTAA
TAAAAACAGCGAAAATAACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.728

99.157

0.444

Multiple sequence alignment