Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   GOM46_RS01570 Genome accession   NZ_CP046525
Coordinates   307912..309738 (+) Length   608 a.a.
NCBI ID   WP_235083755.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 302912..314738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS01550 (GOM46_01535) - 303537..304199 (+) 663 WP_235083752.1 COG3942 and LysM peptidoglycan-binding domain-containing protein -
  GOM46_RS01555 (GOM46_01540) - 304526..306187 (+) 1662 WP_006150309.1 ribonuclease J -
  GOM46_RS01560 (GOM46_01545) - 306256..307035 (+) 780 WP_235083753.1 alpha/beta hydrolase -
  GOM46_RS01565 (GOM46_01550) - 307142..307843 (+) 702 WP_235083754.1 M57 family metalloprotease -
  GOM46_RS01570 (GOM46_01555) uvrC 307912..309738 (+) 1827 WP_235083755.1 excinuclease ABC subunit UvrC Machinery gene
  GOM46_RS01575 (GOM46_01560) rsmH 309807..310757 (+) 951 WP_235083756.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  GOM46_RS01580 (GOM46_01565) ftsL 310767..311084 (+) 318 WP_235083757.1 cell division protein FtsL -
  GOM46_RS01585 (GOM46_01570) pbp2X 311088..313343 (+) 2256 WP_235083758.1 penicillin-binding protein PBP2X -
  GOM46_RS01590 (GOM46_01575) mraY 313345..314325 (+) 981 WP_235083760.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 69723.21 Da        Isoelectric Point: 8.8563

>NTDB_id=352900 GOM46_RS01570 WP_235083755.1 307912..309738(+) (uvrC) [Streptococcus infantis strain SO]
MNNLIKSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDTKTEALVSEIVDFEFIVTESNIEALLLEIN
LIKENKPKYNIMLKDDKSYPFIKITNERYPRLIITRQVKKDGGLYFGPYPDVGAANEIKRLLDRIFPFRKCTNPPSKVCF
YYHIGQCMAHTVCHKDEAYFKAMAQEVSDFLKGQDDKIIDDLKEKMNAAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAK
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHLVPNEILIPQDIDEEAVKAL
VDTKVLKPQRGEKKQLVNLAIKNARVSLEQKFNLLEKSVEKTQGAIENLGRLLKIPTPVRIESFDNSNIMGTSPVSAMVV
FVNGKPSKKDYRKYKIKTVVGPDDYASMREVIRRRYGRVQRDGLTPPDLIVIDGGQGQVNIAKQVIQEELGLDIPIAGLQ
KNDKHQTHELLFGDPLEVVELSRNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKYFKSL
TKIKEASVDEIVAVGIPRAVAEAVHHHLNPEVDSALAQVAEKPVEYEE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=352900 GOM46_RS01570 WP_235083755.1 307912..309738(+) (uvrC) [Streptococcus infantis strain SO]
ATGAATAACTTGATCAAATCAAAACTGGAGCTCTTGCCGACTAGTCCAGGTTGTTACATCCACAAAGACAAGAATGGCAC
CATCATCTATGTGGGGAAGGCTAAAAATCTGCGTAATCGTGTACGGTCCTATTTCCGTGGAAGTCATGATACCAAGACAG
AAGCCTTAGTATCTGAAATCGTAGATTTTGAGTTTATTGTTACGGAGTCCAATATTGAGGCTCTTCTACTTGAAATCAAC
CTGATTAAGGAAAACAAGCCTAAATACAATATTATGCTCAAGGACGATAAGTCCTATCCTTTCATCAAAATCACAAATGA
GCGTTATCCTCGATTGATTATTACCCGTCAGGTCAAGAAAGACGGAGGACTCTATTTTGGTCCCTATCCGGATGTGGGCG
CGGCCAATGAAATCAAACGGCTATTGGATCGGATTTTTCCTTTTCGTAAATGTACCAATCCACCATCGAAGGTATGTTTT
TATTACCATATAGGTCAGTGTATGGCACATACTGTCTGCCATAAAGATGAGGCCTATTTCAAAGCTATGGCCCAAGAAGT
TTCTGATTTTCTTAAGGGACAGGATGATAAAATCATCGATGACCTCAAGGAAAAGATGAATGCGGCGGCTCAGAGCATGG
AATTTGAGCGTGCGGCTGAATACCGTGATTTGATTCAGGCCATTGGAACCCTTCGAACCAAGCAACGTGTTATGGCCAAG
GATCTCCAAAACCGGGATGTCTTCGGTTACTATGTGGATAAGGGTTGGATGTGCGTTCAGGTATTCTTTGTCCGCCAAGG
TAAGCTCATTGAGCGTGATGTCAACCTTTTTCCATACTACAATGATCCAGATGAAGATTTCTTAACCTATGTTGGGCAGT
TTTATCAAGAAAAATCACACTTGGTTCCTAATGAGATTCTGATTCCTCAGGATATTGATGAAGAAGCAGTTAAGGCTTTG
GTGGATACCAAGGTTCTTAAACCCCAGCGCGGGGAGAAAAAGCAACTGGTCAATCTCGCCATCAAAAATGCTCGTGTCAG
TCTAGAGCAGAAATTTAATCTGTTGGAGAAATCGGTTGAAAAGACCCAAGGGGCTATTGAAAACTTAGGACGATTGCTCA
AGATTCCAACCCCAGTCCGTATCGAGTCCTTTGACAATTCCAATATCATGGGGACTAGTCCAGTCTCTGCTATGGTTGTT
TTTGTCAATGGAAAACCTAGCAAGAAGGATTATCGTAAGTATAAAATCAAGACTGTGGTCGGACCAGATGACTATGCTAG
TATGCGTGAGGTCATCCGCAGACGCTATGGGCGCGTCCAGCGTGATGGTTTGACACCGCCAGATTTGATTGTCATTGATG
GTGGTCAAGGTCAGGTTAATATTGCCAAGCAGGTTATTCAAGAAGAGTTAGGGTTAGATATTCCAATCGCAGGTCTGCAA
AAGAATGATAAGCACCAAACCCATGAATTGCTCTTTGGAGATCCTCTTGAAGTGGTAGAGTTGTCTCGGAATTCTCAGGA
ATTTTTTCTCTTGCAACGCATTCAGGATGAGGTTCACCGTTTTGCAATCACCTTCCACCGTCAACTCCGTTCTAAAAATT
CCTTCTCCTCTCAATTGGATGGGATTGAAGGCTTAGGTCCTAAACGCAAGCAGAATTTGATGAAATATTTCAAATCTCTG
ACAAAAATCAAGGAAGCCAGCGTGGATGAGATTGTCGCCGTTGGTATACCAAGAGCTGTGGCAGAAGCAGTTCATCATCA
CCTGAATCCAGAAGTAGACTCAGCGTTAGCTCAAGTAGCTGAGAAGCCAGTTGAATATGAGGAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(196-228)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

94.893

99.836

0.947
  uvrC Streptococcus pneumoniae R6

94.563

99.836

0.944
  uvrC Streptococcus pneumoniae D39

94.563

99.836

0.944