Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   GOM46_RS00665 Genome accession   NZ_CP046525
Coordinates   130700..131611 (+) Length   303 a.a.
NCBI ID   WP_235083662.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 125700..136611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS00645 (GOM46_00645) yajC 126415..126735 (+) 321 WP_235083658.1 preprotein translocase subunit YajC -
  GOM46_RS00650 (GOM46_00650) - 126784..127221 (+) 438 WP_235083659.1 low molecular weight protein-tyrosine-phosphatase -
  GOM46_RS00655 (GOM46_00655) - 127214..127627 (+) 414 WP_235083660.1 MORN repeat-containing protein -
  GOM46_RS00660 (GOM46_00660) adhE 127981..130566 (+) 2586 WP_235083661.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  GOM46_RS00665 (GOM46_00665) comR 130700..131611 (+) 912 WP_235083662.1 helix-turn-helix domain-containing protein Regulator
  GOM46_RS00670 (GOM46_00670) - 131773..132456 (+) 684 WP_235083663.1 ABC transporter ATP-binding protein -
  GOM46_RS00675 (GOM46_00675) - 132425..133726 (+) 1302 WP_235083664.1 ABC transporter permease -
  GOM46_RS00680 (GOM46_00680) gap 133891..134901 (+) 1011 WP_006151032.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  GOM46_RS00685 (GOM46_00685) - 134971..135846 (-) 876 WP_235083665.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 35813.98 Da        Isoelectric Point: 4.5411

>NTDB_id=352877 GOM46_RS00665 WP_235083662.1 130700..131611(+) (comR) [Streptococcus infantis strain SO]
MNDLGEKVRLLREEKGLSRPVFCGDESELSVRQLVRIEKGEFRPTIKTLEYIADRLGIPSYVLMPDYKELPKRYQELKYF
LLHHPDYGDKELQEQKEEYFDEIFECFYDDLPSDEKVLVDCLQAIDEVRATSNSLYGSSVIEGGLQDLLSRDVYKVEDLL
KLRLYFNCQLMDGLNVGEIKESEHETILCFHEKLSSQIDKIEFDCLDLLRDSLLASLACIEIMGLFHYFKRAVETLYKIG
QKTRDFQKQPIVLMVEWKYYIQTDYDTAKQKYEEAKMMARMFGNEKLIVSLDNEWAEDLERYR

Nucleotide


Download         Length: 912 bp        

>NTDB_id=352877 GOM46_RS00665 WP_235083662.1 130700..131611(+) (comR) [Streptococcus infantis strain SO]
ATGAATGATTTAGGGGAAAAGGTAAGACTTCTTAGAGAAGAGAAAGGACTTAGTCGTCCAGTTTTTTGTGGAGATGAGTC
AGAACTGTCAGTTCGTCAGTTGGTCCGCATCGAAAAAGGAGAATTTCGTCCTACGATAAAAACACTAGAATACATTGCGG
ATAGGCTAGGCATTCCATCTTATGTCTTGATGCCAGACTATAAGGAATTACCCAAGCGTTACCAAGAATTAAAATACTTT
CTTCTTCATCATCCTGACTATGGAGACAAAGAGTTACAGGAACAGAAGGAAGAATATTTTGATGAGATTTTTGAATGTTT
TTATGATGATTTGCCAAGTGATGAGAAAGTACTAGTGGATTGTCTTCAAGCTATAGATGAAGTGAGAGCGACTAGTAATT
CCTTATACGGAAGCAGTGTGATTGAGGGCGGTCTTCAAGACTTACTATCCAGAGATGTATATAAAGTTGAGGACCTTTTG
AAATTGAGACTGTATTTCAACTGTCAGTTAATGGATGGTTTAAATGTGGGTGAGATAAAAGAATCTGAGCATGAAACCAT
TCTTTGTTTTCATGAGAAACTAAGTTCGCAGATTGATAAGATAGAGTTCGATTGTTTGGACTTGCTTAGAGATTCCTTGT
TAGCTTCTTTAGCTTGTATAGAAATTATGGGACTGTTTCATTATTTTAAGAGGGCAGTTGAAACGTTATATAAAATAGGA
CAGAAAACACGAGATTTTCAAAAACAACCGATTGTCTTGATGGTGGAGTGGAAATATTATATTCAGACAGATTATGATAC
AGCCAAACAAAAGTATGAGGAGGCAAAAATGATGGCGAGAATGTTTGGCAATGAGAAGTTAATCGTTAGTTTAGATAATG
AATGGGCCGAGGACCTAGAAAGATACCGTTAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(71-295)

Helix-turn-helix (HTH_3)

(9-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis D9

37.377

100

0.376
  comR Streptococcus mutans UA159

37.209

99.34

0.37