Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | E4K03_RS11985 | Genome accession | NZ_CP038262 |
| Coordinates | 2468982..2469362 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain LEV1449/17Ec | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2463982..2474362
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4K03_RS11955 (E4K03_11955) | tadA | 2464087..2464590 (-) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
| E4K03_RS11960 (E4K03_11960) | - | 2464611..2465735 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| E4K03_RS11965 (E4K03_11965) | ung | 2465732..2466445 (-) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| E4K03_RS11970 (E4K03_11970) | - | 2466496..2467092 (-) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| E4K03_RS11975 (E4K03_11975) | gspK | 2467322..2468281 (-) | 960 | WP_000301478.1 | type II secretion system minor pseudopilin GspK | - |
| E4K03_RS11980 (E4K03_11980) | xcpW | 2468281..2468982 (-) | 702 | WP_109267335.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| E4K03_RS11985 (E4K03_11985) | xcpV | 2468982..2469362 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| E4K03_RS11990 (E4K03_11990) | - | 2469352..2469906 (-) | 555 | WP_004841361.1 | type II secretion system protein | - |
| E4K03_RS11995 (E4K03_11995) | - | 2469916..2470524 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| E4K03_RS12000 (E4K03_12000) | - | 2470562..2471335 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| E4K03_RS12005 (E4K03_12005) | - | 2471353..2471694 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| E4K03_RS12010 (E4K03_12010) | - | 2471706..2472686 (-) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| E4K03_RS12015 (E4K03_12015) | kdsB | 2472698..2473459 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=352876 E4K03_RS11985 WP_000836911.1 2468982..2469362(-) (xcpV) [Acinetobacter baumannii strain LEV1449/17Ec]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=352876 E4K03_RS11985 WP_000836911.1 2468982..2469362(-) (xcpV) [Acinetobacter baumannii strain LEV1449/17Ec]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |