Detailed information NTG0352865

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GOM47_RS09560
• Genome accession: NZ_CP046524
• Coordinates: 1926852..1927949 (+)
• Length: 365 a.a.
• NCBI ID: WP_235080662.1
• Uniprot ID: -
• Organism: Streptococcus oralis strain SOT
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1921852..1932949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOM47_RS09535 (GOM47_09535)	pgsA	1922374..1922919 (-)	546	WP_235080658.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
GOM47_RS09540 (GOM47_09540)	rodZ	1922930..1923754 (-)	825	WP_235080659.1	cytoskeleton protein RodZ	-
GOM47_RS09545 (GOM47_09545)	yfmH	1923790..1925073 (-)	1284	WP_235080660.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
GOM47_RS09550 (GOM47_09550)	yfmF	1925070..1926320 (-)	1251	WP_235080661.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
GOM47_RS09555 (GOM47_09555)	yaaA	1926481..1926849 (+)	369	WP_195215749.1	S4 domain-containing protein YaaA	-
GOM47_RS09560 (GOM47_09560)	recF	1926852..1927949 (+)	1098	WP_235080662.1	DNA replication/repair protein RecF	Machinery gene
GOM47_RS09565 (GOM47_09565)	guaB	1928000..1929478 (-)	1479	WP_235080663.1	IMP dehydrogenase	-
GOM47_RS09570 (GOM47_09570)	trpS	1929642..1930667 (-)	1026	WP_235080664.1	tryptophan--tRNA ligase	-
GOM47_RS09575 (GOM47_09575)	-	1930863..1932485 (+)	1623	WP_000958774.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 42006.28 Da
• Isoelectric Point: 9.4652

>NTDB_id=352865 GOM47_RS09560 WP_235080662.1 1926852..1927949(+) (recF) [Streptococcus oralis strain SOT]
MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGMLQKKTGS
IPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQR
NTYLKSSHKIDETFLSVLDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNFTNEEQLTSSFKM
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITKESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFNIQNGKISVNPH

Nucleotide

• Length: 1098 bp

>NTDB_id=352865 GOM47_RS09560 WP_235080662.1 1926852..1927949(+) (recF) [Streptococcus oralis strain SOT]
ATGTGGCTCCAGCATTTAACAATAAAAACCTTTCGAAACTACAAAGAGGCAAAAATTGATTTCAATCCAAAATTAAACGT
CTTTTTAGGCCAAAATGCTCAAGGAAAAACCAATATTCTAGAAGCAATCTATTTCTTAGCCTTGACACGTAGTCATCGTA
CTCGGACAGATAAAAATCTCATTCATTTTGATGAAGAACAACTCCATCTTTCTGGCATGCTACAGAAAAAAACAGGTTCT
ATCCCTCTAGAAATTGATTTAACACCAAAAGGGCGTGTGACTAAAGTCAATCACTTAAAACAAGCTCGTCTCTCAGACTA
CATCGGACATATGAATGTGGTTCTCTTCGCACCTGAGGATCTCCAATTAATTAAAGGAGCACCCTCCGTTCGTCGAAAAT
TTATAGACATCGAACTGGGACAAATTAAACCAATTTACTTGTCAGACCTGTCAAACTACAACCATATACTCAAGCAAAGA
AATACGTATCTAAAATCTAGCCATAAGATTGACGAAACTTTTCTGTCAGTCTTAGATGATCAGTTAGTAGAGTATGGTTG
TCGCGTTATAAAGCATCGAATAAAATTCATTAAAGATTTAGAGAAATTTGGTCAAAAAAAACACTTAGAAATTTCAAATA
AATTAGAAGAGCTGTCAATATCTTATCAATCATCTGTCAACTTCACTAATGAAGAACAGCTAACTAGTTCTTTTAAAATG
GCTTTAGAAAAAAGTAGATCAAGAGACTTATTTAAAAAGAATACTGGTGTTGGCCCTCATCGAGATGATATTTCTTTCTA
TATCAATGGTATGGACGCTAGTTTTGGAAGTCAGGGTCAACATCGCAGTCTTGTACTCTCTATAAAATTAGCAGAAATAG
AGTTAATGGAAAGTATTACTAAAGAATCTCCAATATTACTACTTGACGATGTTATGAGCGAACTTGACAACACTAGACAA
CTAAAATTATTAGAAACGATTTCACAATCTATCCAAACCTTTATCACAACAACAAGTTTAGACCACTTGCAAAATTTGCC
AGAAAATCTTAGTATCTTCAATATCCAAAATGGTAAAATATCTGTAAACCCACATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	89.256	99.452	0.888
recF	Bacillus subtilis subsp. subtilis str. 168	45.924	100	0.463