Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GOM47_RS07920 Genome accession   NZ_CP046524
Coordinates   1559340..1561709 (+) Length   789 a.a.
NCBI ID   WP_235080446.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1554340..1566709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS07895 (GOM47_07890) mutS/mutS2 1554341..1556677 (-) 2337 WP_235080442.1 endonuclease MutS2 Machinery gene
  GOM47_RS07900 (GOM47_07895) - 1556778..1557326 (-) 549 WP_235080443.1 CvpA family protein -
  GOM47_RS07905 (GOM47_07900) zapA 1557323..1557625 (-) 303 WP_000002028.1 cell division protein ZapA -
  GOM47_RS07910 (GOM47_07905) rnhC 1557712..1558593 (+) 882 WP_235080444.1 ribonuclease HIII -
  GOM47_RS07915 (GOM47_07910) lepB 1558597..1559211 (+) 615 WP_235080445.1 signal peptidase I -
  GOM47_RS07920 (GOM47_07915) recD/recD2/recDB 1559340..1561709 (+) 2370 WP_235080446.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GOM47_RS07925 (GOM47_07920) tig 1561908..1563191 (-) 1284 WP_235080447.1 trigger factor -
  GOM47_RS07930 (GOM47_07925) - 1563282..1563938 (-) 657 WP_235080448.1 DNA alkylation repair protein -
  GOM47_RS07935 (GOM47_07930) vraR 1563939..1564571 (-) 633 WP_235080449.1 response regulator transcription factor Regulator
  GOM47_RS07940 (GOM47_07935) - 1564582..1565580 (-) 999 WP_235080450.1 sensor histidine kinase -
  GOM47_RS07945 (GOM47_07940) liaF 1565577..1566275 (-) 699 WP_235080451.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88576.47 Da        Isoelectric Point: 4.5598

>NTDB_id=352838 GOM47_RS07920 WP_235080446.1 1559340..1561709(+) (recD/recD2/recDB) [Streptococcus oralis strain SOT]
MEVYFSGTIERIIFENVSNFYRILLLDIEDTNAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILEHPEKLESIAGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLEFSRPVELDPSQVAQELAHLIEEDKIQQVDTKIFDNSLFFAEEGIRSHLVRILEKEKQKNQDLETIQKH
IASVEKELGIQYDSIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIPLIPQSRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPQQKGQVSFEATQCHYRTGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVIYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSVSKRMLERNLIYTAITRAKSKLILLGELQAFDYAVK
HIGTARKTYLIERFSDLIENNIEESKQTFSETATASDSEQSYILTEENWSSIPAMIGFTDADLKEIFGK

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=352838 GOM47_RS07920 WP_235080446.1 1559340..1561709(+) (recD/recD2/recDB) [Streptococcus oralis strain SOT]
ATGGAAGTTTATTTTTCAGGCACCATTGAACGGATTATTTTTGAAAATGTCAGTAATTTTTATCGCATCCTCCTCCTAGA
TATCGAAGATACCAATGCGGAGGACTTTGACGATTTTGAAATCATCGTTACAGGAACCATGGCAGACGTGATTGAGGGCG
AAGACTACACTTTTTGGGGGCAAATCGTTCAGCACTCCAAGTATGGTGAACAGCTACAGATCAGCCGTTATGAGCGAGCA
AAACCCACTAGTAAAGGCTTGGTCAAGTATTTCTCCAGCAGCCATTTTAAGGGGATTGGACTCAAAACAGCTCAGAAAAT
CGTGGATACCTATGGCGAAAATACTATTGACGAAATTCTGGAGCACCCTGAGAAGCTGGAAAGCATTGCTGGACTCTCTG
CCAAAAACCGTGAGGCTTTTGTTTCCACCCTCCGTCTTAACTATGGGACAGAGATGGTTTTGGCTAAACTTGCCAACTAC
GGCATTCCCAATAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAGGAAACTCTTGATGTGGTTGAAAATTATCCCTA
CCAGCTGGTCGAGGATATCAAAGGCTTGGGTTTTACCATCGCCGACCAATTAGCTGCCGAACTAGGCATCGAAAGTCAAG
CTCCTGAACGCTTCCGTGCTGGCCTTGTCCACAGTCTCTTTCAAGGTTGTATGGATACGGGCGATACCTATATGGAGGCT
CGAGATTTGCTGGAACAGACACTTACTCTCCTCGAGTTTTCCCGTCCCGTGGAACTCGATCCCAGCCAAGTAGCTCAGGA
ATTAGCTCATTTGATCGAAGAAGATAAAATCCAACAGGTGGATACCAAAATCTTTGATAACAGTCTCTTTTTCGCTGAAG
AAGGCATTCGCAGTCACTTGGTTCGTATCCTTGAAAAAGAAAAGCAGAAAAATCAGGATTTGGAAACCATTCAAAAGCAT
ATCGCTAGCGTTGAGAAAGAACTGGGTATCCAATACGATAGCATCCAAAAACAGGCTATCTGCGACGCTATCCAGAACAA
GGTCTTTATCCTGACAGGTGGGCCTGGTACAGGTAAAACCACTGTTATCAATGGGATTATCGCTGTCTATGCCCTTTTAG
AAGGACTTGACCTCAGGAAGAAAAGCAACTTACCTATCCTTCTAGCAGCTCCAACTGGTCGAGCCGCTCGGCGCATGAAT
GAATTGACAGGTTTGCCTAGCGCTACTATACACCGTCATTTGGGGATGACGGGAGACGATGATACAAGTCATCTGGAAGA
TTATCTGGATGCCGACTTTATTATCGTGGATGAGTTTTCTATGGTGGACACTTGGCTAGCCAACCAACTTTTCTCCAACA
TCTCCTCTAACAGCAAAATTCTCATCGTGGGTGATAGCGACCAGTTGCCTTCTGTTAGTCCTGGACAAGTCCTGGCTGAT
CTGCTCCAGATACCCCTGATTCCCCAGAGTCGCTTGGAAAAAATTTATCGTCAGAGTGAAGAATCAACTATCGTCACCTT
GGCTAGTCAGATTCGACAAGGCATCTTGCCAGCTGACTTTACCCAGAAAAAAGCTGACCGTTCCTACTTTGAAATCGCTA
GTGGCCATATCCCAGCTACGATTGAGAAAATTCTTGGTGCTGCCCTCAGAAGTGGCATTCCGGCTCGTGATATTCAGGTG
CTAGCGCCCATGTATCGAGGAACTGCTGGTATTGACGCCATCAACCAGCTCATGCAAGACCTGCTCAATCCTCAGCAAAA
GGGGCAAGTTAGCTTTGAAGCAACTCAGTGTCACTATCGAACAGGAGACAAGGTCATTCACCTAGTCAACGACGCTGAAG
TTAATGTCTTTAACGGAGATCTAGGCTACATCACAGACCTGATTCCTGGAAAATACACCGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGATGGCAATGAGGTCATCTATCCACGCAACGAATGGTACAAGATTCGACTAGCCTATGCCATGAGCAT
CCATAAGTCTCAGGGAAGTGAGTTTCCTGTTGTCATCCTGCCCATCACCAGTGTTAGCAAGCGCATGCTGGAGCGAAATC
TCATCTACACAGCCATTACACGCGCCAAAAGCAAACTTATCTTACTAGGTGAATTACAGGCTTTCGACTATGCAGTCAAG
CACATCGGAACTGCCCGCAAGACCTATCTGATTGAACGCTTCAGTGATTTAATTGAAAATAATATTGAAGAAAGTAAACA
AACCTTCTCTGAAACTGCCACAGCAAGTGACTCTGAACAATCCTACATCCTCACCGAGGAAAACTGGTCTAGTATTCCCG
CTATGATTGGGTTTACAGATGCAGATCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

AAA domain (AAA_30)

(332-520)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.287

95.311

0.403

Multiple sequence alignment